miRNA display CGI

Results 1 - 7 of 7 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21158	3'	-52.7	NC_004775.1	+	14034	0.66	0.779035
	Target:  5'- uGGCGCaaugGCagaggCUACCugUCgCAUCGCCg -3' miRNA:   3'- gUCGCG----CGaaaa-GAUGG--AG-GUAGCGG- -5'
21158	3'	-52.7	NC_004775.1	+	4882	0.66	0.725044
	Target:  5'- uGGCucccuGUGCUgcggcCUGCC-CCAUUGCCa -3' miRNA:   3'- gUCG-----CGCGAaaa--GAUGGaGGUAGCGG- -5'
21158	3'	-52.7	NC_004775.1	+	1275	0.68	0.657056
	Target:  5'- uCAGCGCGCcuucugCUACUUCCcacaccagAUCGgCa -3' miRNA:   3'- -GUCGCGCGaaaa--GAUGGAGG--------UAGCgG- -5'
21158	3'	-52.7	NC_004775.1	+	21782	0.7	0.531681
	Target:  5'- uGGCGCuGCUUUUUcACCgCCGUCuGCUa -3' miRNA:   3'- gUCGCG-CGAAAAGaUGGaGGUAG-CGG- -5'
21158	3'	-52.7	NC_004775.1	+	32960	0.7	0.520611
	Target:  5'- gCGGCGgccUGCUUcUCUACagUCCAUuCGCCa -3' miRNA:   3'- -GUCGC---GCGAAaAGAUGg-AGGUA-GCGG- -5'
21158	3'	-52.7	NC_004775.1	+	18473	0.7	0.487974
	Target:  5'- uGGCaGCGCUUggagaUCUACCgCCugagCGCCu -3' miRNA:   3'- gUCG-CGCGAAa----AGAUGGaGGua--GCGG- -5'
21158	3'	-52.7	NC_004775.1	+	29532	1.13	0.000569
	Target:  5'- aCAGCGCGCUUUUCUACCUCCAUCGCCg -3' miRNA:   3'- -GUCGCGCGAAAAGAUGGAGGUAGCGG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home