miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21167 5' -44.4 NC_004777.1 + 33206 0.66 0.996048
Target:  5'- uGUUCAACGUaGAGaguGGaCAAcaGCGAuAGGUg -3'
miRNA:   3'- -CAAGUUGUA-CUU---CC-GUU--UGCUuUCCG- -5'
21167 5' -44.4 NC_004777.1 + 12769 0.66 0.993291
Target:  5'- ---aGGCGUGGgguuaucgcuuAGGCgAGAUGAAGGGUg -3'
miRNA:   3'- caagUUGUACU-----------UCCG-UUUGCUUUCCG- -5'
21167 5' -44.4 NC_004777.1 + 9243 0.67 0.992089
Target:  5'- --cCAACGcuuAAGGuCGAACGAuGGGCa -3'
miRNA:   3'- caaGUUGUac-UUCC-GUUUGCUuUCCG- -5'
21167 5' -44.4 NC_004777.1 + 17154 0.67 0.989174
Target:  5'- ---aAGCAUGAAGGCGAgacaauGCGuguauacuuuaaGGAGGUa -3'
miRNA:   3'- caagUUGUACUUCCGUU------UGC------------UUUCCG- -5'
21167 5' -44.4 NC_004777.1 + 11439 0.67 0.987434
Target:  5'- --aCAACGUGGAaGCAAaacgucugaACGAuGAGGCu -3'
miRNA:   3'- caaGUUGUACUUcCGUU---------UGCU-UUCCG- -5'
21167 5' -44.4 NC_004777.1 + 18928 0.69 0.960738
Target:  5'- gGUUCAGCGUacAGGUGAACGAgugaccgccgAAGGa -3'
miRNA:   3'- -CAAGUUGUAcuUCCGUUUGCU----------UUCCg -5'
21167 5' -44.4 NC_004777.1 + 15205 0.7 0.946492
Target:  5'- aGUU--ACGUGAAGGauguAACGAcaAAGGCa -3'
miRNA:   3'- -CAAguUGUACUUCCgu--UUGCU--UUCCG- -5'
21167 5' -44.4 NC_004777.1 + 10261 0.74 0.823806
Target:  5'- uGUUCGAUAUGGacgaagcuggacgcaAGGCAGuCGaAGAGGCc -3'
miRNA:   3'- -CAAGUUGUACU---------------UCCGUUuGC-UUUCCG- -5'
21167 5' -44.4 NC_004777.1 + 15123 0.77 0.66986
Target:  5'- -aUCAACugAUGGAGGCuGACGAAuacguGGCu -3'
miRNA:   3'- caAGUUG--UACUUCCGuUUGCUUu----CCG- -5'
21167 5' -44.4 NC_004777.1 + 18959 1.15 0.003364
Target:  5'- aGUUCAACAUGAAGGCAAACGAAAGGCg -3'
miRNA:   3'- -CAAGUUGUACUUCCGUUUGCUUUCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.