Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 21170 | 5' | -50.2 | NC_004777.1 | + | 23081 | 1.09 | 0.001614 |
|
Target: 5'- cUGCUUGGCUAACCUUUCGGCUAACCAu -3' miRNA: 3'- -ACGAACCGAUUGGAAAGCCGAUUGGU- -5' |
|||||||
| 21170 | 5' | -50.2 | NC_004777.1 | + | 23010 | 0.7 | 0.603234 |
|
Target: 5'- aUGCccaaUGGUUAGCCgaaaGGUUAGCCAa -3' miRNA: 3'- -ACGa---ACCGAUUGGaaagCCGAUUGGU- -5' |
|||||||
| 21170 | 5' | -50.2 | NC_004777.1 | + | 8764 | 0.68 | 0.755497 |
|
Target: 5'- aGUUUGGCUAACUug-CGGUUAcUCAu -3' miRNA: 3'- aCGAACCGAUUGGaaaGCCGAUuGGU- -5' |
|||||||
| 21170 | 5' | -50.2 | NC_004777.1 | + | 31765 | 0.67 | 0.788238 |
|
Target: 5'- gGCUaUGGCUGACCUagUUGGCg----- -3' miRNA: 3'- aCGA-ACCGAUUGGAa-AGCCGauuggu -5' |
|||||||
| 21170 | 5' | -50.2 | NC_004777.1 | + | 20390 | 0.67 | 0.788238 |
|
Target: 5'- cGCUUGG-UAGCCUga-GGuUUAGCCGg -3' miRNA: 3'- aCGAACCgAUUGGAaagCC-GAUUGGU- -5' |
|||||||
| 21170 | 5' | -50.2 | NC_004777.1 | + | 13837 | 0.67 | 0.798789 |
|
Target: 5'- cUGCUUGGCUcACUUcaUGGCUcGCUu -3' miRNA: 3'- -ACGAACCGAuUGGAaaGCCGAuUGGu -5' |
|||||||
| 21170 | 5' | -50.2 | NC_004777.1 | + | 2597 | 0.66 | 0.819266 |
|
Target: 5'- aUGCUUGaGCaAGCCaacaagUUCG-CUAACCAu -3' miRNA: 3'- -ACGAAC-CGaUUGGa-----AAGCcGAUUGGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home