miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21181 5' -60.7 NC_004778.3 + 77364 0.66 0.63978
Target:  5'- uGGCgCGCCGCGCGcUGGuGcaaugcgcacgcgccGGCCGCgucGCu -3'
miRNA:   3'- -CUG-GCGGUGCGCaACC-U---------------CCGGCGa--CG- -5'
21181 5' -60.7 NC_004778.3 + 83857 0.69 0.460955
Target:  5'- aGGCgCGCCAgGCGcUGGAGGagCGCUacguGCg -3'
miRNA:   3'- -CUG-GCGGUgCGCaACCUCCg-GCGA----CG- -5'
21181 5' -60.7 NC_004778.3 + 85453 0.73 0.268276
Target:  5'- cGCCgGCCGCGCGUUGGGcGGCgCGCc-- -3'
miRNA:   3'- cUGG-CGGUGCGCAACCU-CCG-GCGacg -5'
21181 5' -60.7 NC_004778.3 + 85587 0.66 0.645801
Target:  5'- aGCCGgCAccuguugcCGCGUcGGAcGGCCGC-GCa -3'
miRNA:   3'- cUGGCgGU--------GCGCAaCCU-CCGGCGaCG- -5'
21181 5' -60.7 NC_004778.3 + 93075 0.68 0.555969
Target:  5'- -uCUGCCAagGCGUUGGucGC-GCUGCa -3'
miRNA:   3'- cuGGCGGUg-CGCAACCucCGgCGACG- -5'
21181 5' -60.7 NC_004778.3 + 93077 0.67 0.595663
Target:  5'- aGuuGCCuAUGaCGUUGGAGugcagcguGCCGUUGCg -3'
miRNA:   3'- cUggCGG-UGC-GCAACCUC--------CGGCGACG- -5'
21181 5' -60.7 NC_004778.3 + 94518 0.67 0.629741
Target:  5'- cGCCGCCGCGCacaaUGGccauGcgcuugcgguauaacGCCGCUGCc -3'
miRNA:   3'- cUGGCGGUGCGca--ACCu---C---------------CGGCGACG- -5'
21181 5' -60.7 NC_004778.3 + 95027 0.66 0.674821
Target:  5'- gGGCaCGCCGCGCuGccGGAgcagcccGGCCacgaGCUGCa -3'
miRNA:   3'- -CUG-GCGGUGCG-CaaCCU-------CCGG----CGACG- -5'
21181 5' -60.7 NC_004778.3 + 95981 0.66 0.685765
Target:  5'- aGCaCGCCGC-CGUgcGGAcGGCCGC-GCu -3'
miRNA:   3'- cUG-GCGGUGcGCAa-CCU-CCGGCGaCG- -5'
21181 5' -60.7 NC_004778.3 + 97174 0.66 0.635764
Target:  5'- cGCCGCCggccagcguGCGCgGUUGGcAGGaCGCcGCg -3'
miRNA:   3'- cUGGCGG---------UGCG-CAACC-UCCgGCGaCG- -5'
21181 5' -60.7 NC_004778.3 + 97297 0.78 0.138858
Target:  5'- uGGCCGCgGCGCaUUGGAGcGCCGUcgUGCa -3'
miRNA:   3'- -CUGGCGgUGCGcAACCUC-CGGCG--ACG- -5'
21181 5' -60.7 NC_004778.3 + 97387 0.67 0.585685
Target:  5'- uGACCGCCAuCGUG-UGGcGGCgCGCa-- -3'
miRNA:   3'- -CUGGCGGU-GCGCaACCuCCG-GCGacg -5'
21181 5' -60.7 NC_004778.3 + 100239 0.66 0.635764
Target:  5'- cGACUGCCGCGUGcgcgaUUGGcuGCCGa-GCg -3'
miRNA:   3'- -CUGGCGGUGCGC-----AACCucCGGCgaCG- -5'
21181 5' -60.7 NC_004778.3 + 102178 0.68 0.555969
Target:  5'- uGACUGCgacuuuguggACGCGggcugugacGGAGGCCuGCUGCa -3'
miRNA:   3'- -CUGGCGg---------UGCGCaa-------CCUCCGG-CGACG- -5'
21181 5' -60.7 NC_004778.3 + 103425 0.66 0.655828
Target:  5'- uGCCGCCAUGU--UGGcGGaCGUUGCu -3'
miRNA:   3'- cUGGCGGUGCGcaACCuCCgGCGACG- -5'
21181 5' -60.7 NC_004778.3 + 104536 0.67 0.605667
Target:  5'- aGCCGUggcaacaaCACGCGcuUUGGuucGGgCGCUGCg -3'
miRNA:   3'- cUGGCG--------GUGCGC--AACCu--CCgGCGACG- -5'
21181 5' -60.7 NC_004778.3 + 107689 0.69 0.49804
Target:  5'- aACC-UUGCGCG-UGGAGGCCGCcacGCg -3'
miRNA:   3'- cUGGcGGUGCGCaACCUCCGGCGa--CG- -5'
21181 5' -60.7 NC_004778.3 + 107764 0.66 0.675818
Target:  5'- cACCGCguCGCGcucgucGGGGGCgucgCGUUGCg -3'
miRNA:   3'- cUGGCGguGCGCaa----CCUCCG----GCGACG- -5'
21181 5' -60.7 NC_004778.3 + 108417 0.66 0.675818
Target:  5'- uGCCGCgGCGCaggUGGAcGcGCUGgUGCg -3'
miRNA:   3'- cUGGCGgUGCGca-ACCU-C-CGGCgACG- -5'
21181 5' -60.7 NC_004778.3 + 114295 0.66 0.664836
Target:  5'- cGCUGCCGCgaccgauGCGUUuGAuaauGGCCGCgUGCg -3'
miRNA:   3'- cUGGCGGUG-------CGCAAcCU----CCGGCG-ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.