Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21181 | 5' | -60.7 | NC_004778.3 | + | 10709 | 0.67 | 0.585685 |
Target: 5'- cGCCGCCGCGCc---GAGGCCaaGC-GCa -3' miRNA: 3'- cUGGCGGUGCGcaacCUCCGG--CGaCG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 11976 | 0.68 | 0.517078 |
Target: 5'- -cCCGCgACcauCGUcaacgUGGcAGGCCGCUGCc -3' miRNA: 3'- cuGGCGgUGc--GCA-----ACC-UCCGGCGACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 14391 | 0.67 | 0.585685 |
Target: 5'- cGACgGgCAgGCGUUGGGGGagCGCggacGCg -3' miRNA: 3'- -CUGgCgGUgCGCAACCUCCg-GCGa---CG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 17237 | 0.66 | 0.665836 |
Target: 5'- cGGCCGCUAUGCGc--GAGGgCGCcgagaacgaagUGCa -3' miRNA: 3'- -CUGGCGGUGCGCaacCUCCgGCG-----------ACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 21139 | 0.66 | 0.665836 |
Target: 5'- uGCCGCUcuGCgGCGUcgGGAGcGCCGUgauuuuggUGCg -3' miRNA: 3'- cUGGCGG--UG-CGCAa-CCUC-CGGCG--------ACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 23976 | 0.7 | 0.408218 |
Target: 5'- -uCCGuCCGagGCGcgGGAucGGCCGCUGCg -3' miRNA: 3'- cuGGC-GGUg-CGCaaCCU--CCGGCGACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 30416 | 0.74 | 0.244254 |
Target: 5'- cGCCGCgACGCGUUGccGGgCGUUGCg -3' miRNA: 3'- cUGGCGgUGCGCAACcuCCgGCGACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 32847 | 0.66 | 0.685765 |
Target: 5'- cGGCCGCCGCGC--UGGcuagcAGGgugcuccacgacCCGCUGg -3' miRNA: 3'- -CUGGCGGUGCGcaACC-----UCC------------GGCGACg -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 32955 | 0.68 | 0.526707 |
Target: 5'- cACCGCCGCGUGgcUGuGcGGCCGCg-- -3' miRNA: 3'- cUGGCGGUGCGCa-AC-CuCCGGCGacg -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 33260 | 0.75 | 0.227431 |
Target: 5'- uGCCGCCguuugagcgGCGCGUggaaGAGGUCGUUGCa -3' miRNA: 3'- cUGGCGG---------UGCGCAac--CUCCGGCGACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 34162 | 0.66 | 0.635764 |
Target: 5'- cGGCUGCaagCACGCGUUagcgacggugcGGucGCCGCgGCg -3' miRNA: 3'- -CUGGCG---GUGCGCAA-----------CCucCGGCGaCG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 35827 | 0.67 | 0.575739 |
Target: 5'- cGCCGCaccaacaaGCGCcUUGGGGGCCaGUgGCg -3' miRNA: 3'- cUGGCGg-------UGCGcAACCUCCGG-CGaCG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 36421 | 0.67 | 0.61569 |
Target: 5'- uGAUC-CU--GCGUUGG-GGCUGCUGCg -3' miRNA: 3'- -CUGGcGGugCGCAACCuCCGGCGACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 38933 | 0.67 | 0.625725 |
Target: 5'- --gCGCUGCGCGUgcggaucggcgUGGucGCCGCcGCg -3' miRNA: 3'- cugGCGGUGCGCA-----------ACCucCGGCGaCG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 41206 | 0.66 | 0.685765 |
Target: 5'- cACCGUCGCacgugguuucGCGUUugacGGGcGGCCGCgccgGCa -3' miRNA: 3'- cUGGCGGUG----------CGCAA----CCU-CCGGCGa---CG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 43086 | 0.66 | 0.653824 |
Target: 5'- aGACgaGCgCGCGCGgccuuacuaccGGcGGCUGCUGCg -3' miRNA: 3'- -CUGg-CG-GUGCGCaa---------CCuCCGGCGACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 61322 | 0.74 | 0.256034 |
Target: 5'- cGGCCGCUucaACGgGUUGGuGGauGCUGCg -3' miRNA: 3'- -CUGGCGG---UGCgCAACCuCCggCGACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 61955 | 0.66 | 0.635764 |
Target: 5'- --aCGCCGCGUucucgaacauGUcGGGGcgcuuGCCGCUGCg -3' miRNA: 3'- cugGCGGUGCG----------CAaCCUC-----CGGCGACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 67879 | 0.67 | 0.612682 |
Target: 5'- aGACCGCCGCGCaaaUGGAauacaaucuuaagcGGaaaCGCgGCa -3' miRNA: 3'- -CUGGCGGUGCGca-ACCU--------------CCg--GCGaCG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 71635 | 0.68 | 0.536401 |
Target: 5'- aACCaGCaAgGCGUUGGuGGCCGauaUGCa -3' miRNA: 3'- cUGG-CGgUgCGCAACCuCCGGCg--ACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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