miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21181 5' -60.7 NC_004778.3 + 10709 0.67 0.585685
Target:  5'- cGCCGCCGCGCc---GAGGCCaaGC-GCa -3'
miRNA:   3'- cUGGCGGUGCGcaacCUCCGG--CGaCG- -5'
21181 5' -60.7 NC_004778.3 + 11976 0.68 0.517078
Target:  5'- -cCCGCgACcauCGUcaacgUGGcAGGCCGCUGCc -3'
miRNA:   3'- cuGGCGgUGc--GCA-----ACC-UCCGGCGACG- -5'
21181 5' -60.7 NC_004778.3 + 14391 0.67 0.585685
Target:  5'- cGACgGgCAgGCGUUGGGGGagCGCggacGCg -3'
miRNA:   3'- -CUGgCgGUgCGCAACCUCCg-GCGa---CG- -5'
21181 5' -60.7 NC_004778.3 + 17237 0.66 0.665836
Target:  5'- cGGCCGCUAUGCGc--GAGGgCGCcgagaacgaagUGCa -3'
miRNA:   3'- -CUGGCGGUGCGCaacCUCCgGCG-----------ACG- -5'
21181 5' -60.7 NC_004778.3 + 21139 0.66 0.665836
Target:  5'- uGCCGCUcuGCgGCGUcgGGAGcGCCGUgauuuuggUGCg -3'
miRNA:   3'- cUGGCGG--UG-CGCAa-CCUC-CGGCG--------ACG- -5'
21181 5' -60.7 NC_004778.3 + 23976 0.7 0.408218
Target:  5'- -uCCGuCCGagGCGcgGGAucGGCCGCUGCg -3'
miRNA:   3'- cuGGC-GGUg-CGCaaCCU--CCGGCGACG- -5'
21181 5' -60.7 NC_004778.3 + 30416 0.74 0.244254
Target:  5'- cGCCGCgACGCGUUGccGGgCGUUGCg -3'
miRNA:   3'- cUGGCGgUGCGCAACcuCCgGCGACG- -5'
21181 5' -60.7 NC_004778.3 + 32847 0.66 0.685765
Target:  5'- cGGCCGCCGCGC--UGGcuagcAGGgugcuccacgacCCGCUGg -3'
miRNA:   3'- -CUGGCGGUGCGcaACC-----UCC------------GGCGACg -5'
21181 5' -60.7 NC_004778.3 + 32955 0.68 0.526707
Target:  5'- cACCGCCGCGUGgcUGuGcGGCCGCg-- -3'
miRNA:   3'- cUGGCGGUGCGCa-AC-CuCCGGCGacg -5'
21181 5' -60.7 NC_004778.3 + 33260 0.75 0.227431
Target:  5'- uGCCGCCguuugagcgGCGCGUggaaGAGGUCGUUGCa -3'
miRNA:   3'- cUGGCGG---------UGCGCAac--CUCCGGCGACG- -5'
21181 5' -60.7 NC_004778.3 + 34162 0.66 0.635764
Target:  5'- cGGCUGCaagCACGCGUUagcgacggugcGGucGCCGCgGCg -3'
miRNA:   3'- -CUGGCG---GUGCGCAA-----------CCucCGGCGaCG- -5'
21181 5' -60.7 NC_004778.3 + 35827 0.67 0.575739
Target:  5'- cGCCGCaccaacaaGCGCcUUGGGGGCCaGUgGCg -3'
miRNA:   3'- cUGGCGg-------UGCGcAACCUCCGG-CGaCG- -5'
21181 5' -60.7 NC_004778.3 + 36421 0.67 0.61569
Target:  5'- uGAUC-CU--GCGUUGG-GGCUGCUGCg -3'
miRNA:   3'- -CUGGcGGugCGCAACCuCCGGCGACG- -5'
21181 5' -60.7 NC_004778.3 + 38933 0.67 0.625725
Target:  5'- --gCGCUGCGCGUgcggaucggcgUGGucGCCGCcGCg -3'
miRNA:   3'- cugGCGGUGCGCA-----------ACCucCGGCGaCG- -5'
21181 5' -60.7 NC_004778.3 + 41206 0.66 0.685765
Target:  5'- cACCGUCGCacgugguuucGCGUUugacGGGcGGCCGCgccgGCa -3'
miRNA:   3'- cUGGCGGUG----------CGCAA----CCU-CCGGCGa---CG- -5'
21181 5' -60.7 NC_004778.3 + 43086 0.66 0.653824
Target:  5'- aGACgaGCgCGCGCGgccuuacuaccGGcGGCUGCUGCg -3'
miRNA:   3'- -CUGg-CG-GUGCGCaa---------CCuCCGGCGACG- -5'
21181 5' -60.7 NC_004778.3 + 61322 0.74 0.256034
Target:  5'- cGGCCGCUucaACGgGUUGGuGGauGCUGCg -3'
miRNA:   3'- -CUGGCGG---UGCgCAACCuCCggCGACG- -5'
21181 5' -60.7 NC_004778.3 + 61955 0.66 0.635764
Target:  5'- --aCGCCGCGUucucgaacauGUcGGGGcgcuuGCCGCUGCg -3'
miRNA:   3'- cugGCGGUGCG----------CAaCCUC-----CGGCGACG- -5'
21181 5' -60.7 NC_004778.3 + 67879 0.67 0.612682
Target:  5'- aGACCGCCGCGCaaaUGGAauacaaucuuaagcGGaaaCGCgGCa -3'
miRNA:   3'- -CUGGCGGUGCGca-ACCU--------------CCg--GCGaCG- -5'
21181 5' -60.7 NC_004778.3 + 71635 0.68 0.536401
Target:  5'- aACCaGCaAgGCGUUGGuGGCCGauaUGCa -3'
miRNA:   3'- cUGG-CGgUgCGCAACCuCCGGCg--ACG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.