miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21181 5' -60.7 NC_004778.3 + 33260 0.75 0.227431
Target:  5'- uGCCGCCguuugagcgGCGCGUggaaGAGGUCGUUGCa -3'
miRNA:   3'- cUGGCGG---------UGCGCAac--CUCCGGCGACG- -5'
21181 5' -60.7 NC_004778.3 + 108417 0.66 0.675818
Target:  5'- uGCCGCgGCGCaggUGGAcGcGCUGgUGCg -3'
miRNA:   3'- cUGGCGgUGCGca-ACCU-C-CGGCgACG- -5'
21181 5' -60.7 NC_004778.3 + 107764 0.66 0.675818
Target:  5'- cACCGCguCGCGcucgucGGGGGCgucgCGUUGCg -3'
miRNA:   3'- cUGGCGguGCGCaa----CCUCCG----GCGACG- -5'
21181 5' -60.7 NC_004778.3 + 21139 0.66 0.665836
Target:  5'- uGCCGCUcuGCgGCGUcgGGAGcGCCGUgauuuuggUGCg -3'
miRNA:   3'- cUGGCGG--UG-CGCAa-CCUC-CGGCG--------ACG- -5'
21181 5' -60.7 NC_004778.3 + 114295 0.66 0.664836
Target:  5'- cGCUGCCGCgaccgauGCGUUuGAuaauGGCCGCgUGCg -3'
miRNA:   3'- cUGGCGGUG-------CGCAAcCU----CCGGCG-ACG- -5'
21181 5' -60.7 NC_004778.3 + 103425 0.66 0.655828
Target:  5'- uGCCGCCAUGU--UGGcGGaCGUUGCu -3'
miRNA:   3'- cUGGCGGUGCGcaACCuCCgGCGACG- -5'
21181 5' -60.7 NC_004778.3 + 43086 0.66 0.653824
Target:  5'- aGACgaGCgCGCGCGgccuuacuaccGGcGGCUGCUGCg -3'
miRNA:   3'- -CUGg-CG-GUGCGCaa---------CCuCCGGCGACG- -5'
21181 5' -60.7 NC_004778.3 + 77364 0.66 0.63978
Target:  5'- uGGCgCGCCGCGCGcUGGuGcaaugcgcacgcgccGGCCGCgucGCu -3'
miRNA:   3'- -CUG-GCGGUGCGCaACC-U---------------CCGGCGa--CG- -5'
21181 5' -60.7 NC_004778.3 + 61955 0.66 0.635764
Target:  5'- --aCGCCGCGUucucgaacauGUcGGGGcgcuuGCCGCUGCg -3'
miRNA:   3'- cugGCGGUGCG----------CAaCCUC-----CGGCGACG- -5'
21181 5' -60.7 NC_004778.3 + 38933 0.67 0.625725
Target:  5'- --gCGCUGCGCGUgcggaucggcgUGGucGCCGCcGCg -3'
miRNA:   3'- cugGCGGUGCGCA-----------ACCucCGGCGaCG- -5'
21181 5' -60.7 NC_004778.3 + 97387 0.67 0.585685
Target:  5'- uGACCGCCAuCGUG-UGGcGGCgCGCa-- -3'
miRNA:   3'- -CUGGCGGU-GCGCaACCuCCG-GCGacg -5'
21181 5' -60.7 NC_004778.3 + 125733 0.7 0.425381
Target:  5'- --aUGCCGCGCGUUGGuacGGCUGUccauugUGCc -3'
miRNA:   3'- cugGCGGUGCGCAACCu--CCGGCG------ACG- -5'
21181 5' -60.7 NC_004778.3 + 107689 0.69 0.49804
Target:  5'- aACC-UUGCGCG-UGGAGGCCGCcacGCg -3'
miRNA:   3'- cUGGcGGUGCGCaACCUCCGGCGa--CG- -5'
21181 5' -60.7 NC_004778.3 + 11976 0.68 0.517078
Target:  5'- -cCCGCgACcauCGUcaacgUGGcAGGCCGCUGCc -3'
miRNA:   3'- cuGGCGgUGc--GCA-----ACC-UCCGGCGACG- -5'
21181 5' -60.7 NC_004778.3 + 32955 0.68 0.526707
Target:  5'- cACCGCCGCGUGgcUGuGcGGCCGCg-- -3'
miRNA:   3'- cUGGCGGUGCGCa-AC-CuCCGGCGacg -5'
21181 5' -60.7 NC_004778.3 + 93075 0.68 0.555969
Target:  5'- -uCUGCCAagGCGUUGGucGC-GCUGCa -3'
miRNA:   3'- cuGGCGGUg-CGCAACCucCGgCGACG- -5'
21181 5' -60.7 NC_004778.3 + 102178 0.68 0.555969
Target:  5'- uGACUGCgacuuuguggACGCGggcugugacGGAGGCCuGCUGCa -3'
miRNA:   3'- -CUGGCGg---------UGCGCaa-------CCUCCGG-CGACG- -5'
21181 5' -60.7 NC_004778.3 + 35827 0.67 0.575739
Target:  5'- cGCCGCaccaacaaGCGCcUUGGGGGCCaGUgGCg -3'
miRNA:   3'- cUGGCGg-------UGCGcAACCUCCGG-CGaCG- -5'
21181 5' -60.7 NC_004778.3 + 128448 1.1 0.00073
Target:  5'- gGACCGCCACGCGUUGGAGGCCGCUGCu -3'
miRNA:   3'- -CUGGCGGUGCGCAACCUCCGGCGACG- -5'
21181 5' -60.7 NC_004778.3 + 95981 0.66 0.685765
Target:  5'- aGCaCGCCGC-CGUgcGGAcGGCCGC-GCu -3'
miRNA:   3'- cUG-GCGGUGcGCAa-CCU-CCGGCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.