Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21181 | 5' | -60.7 | NC_004778.3 | + | 95027 | 0.66 | 0.674821 |
Target: 5'- gGGCaCGCCGCGCuGccGGAgcagcccGGCCacgaGCUGCa -3' miRNA: 3'- -CUG-GCGGUGCG-CaaCCU-------CCGG----CGACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 71635 | 0.68 | 0.536401 |
Target: 5'- aACCaGCaAgGCGUUGGuGGCCGauaUGCa -3' miRNA: 3'- cUGG-CGgUgCGCAACCuCCGGCg--ACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 23976 | 0.7 | 0.408218 |
Target: 5'- -uCCGuCCGagGCGcgGGAucGGCCGCUGCg -3' miRNA: 3'- cuGGC-GGUg-CGCaaCCU--CCGGCGACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 128448 | 1.1 | 0.00073 |
Target: 5'- gGACCGCCACGCGUUGGAGGCCGCUGCu -3' miRNA: 3'- -CUGGCGGUGCGCAACCUCCGGCGACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 97174 | 0.66 | 0.635764 |
Target: 5'- cGCCGCCggccagcguGCGCgGUUGGcAGGaCGCcGCg -3' miRNA: 3'- cUGGCGG---------UGCG-CAACC-UCCgGCGaCG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 100239 | 0.66 | 0.635764 |
Target: 5'- cGACUGCCGCGUGcgcgaUUGGcuGCCGa-GCg -3' miRNA: 3'- -CUGGCGGUGCGC-----AACCucCGGCgaCG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 94518 | 0.67 | 0.629741 |
Target: 5'- cGCCGCCGCGCacaaUGGccauGcgcuugcgguauaacGCCGCUGCc -3' miRNA: 3'- cUGGCGGUGCGca--ACCu---C---------------CGGCGACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 41206 | 0.66 | 0.685765 |
Target: 5'- cACCGUCGCacgugguuucGCGUUugacGGGcGGCCGCgccgGCa -3' miRNA: 3'- cUGGCGGUG----------CGCAA----CCU-CCGGCGa---CG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 95981 | 0.66 | 0.685765 |
Target: 5'- aGCaCGCCGC-CGUgcGGAcGGCCGC-GCu -3' miRNA: 3'- cUG-GCGGUGcGCAa-CCU-CCGGCGaCG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 14391 | 0.67 | 0.585685 |
Target: 5'- cGACgGgCAgGCGUUGGGGGagCGCggacGCg -3' miRNA: 3'- -CUGgCgGUgCGCAACCUCCg-GCGa---CG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 104536 | 0.67 | 0.605667 |
Target: 5'- aGCCGUggcaacaaCACGCGcuUUGGuucGGgCGCUGCg -3' miRNA: 3'- cUGGCG--------GUGCGC--AACCu--CCgGCGACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 67879 | 0.67 | 0.612682 |
Target: 5'- aGACCGCCGCGCaaaUGGAauacaaucuuaagcGGaaaCGCgGCa -3' miRNA: 3'- -CUGGCGGUGCGca-ACCU--------------CCg--GCGaCG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 17237 | 0.66 | 0.665836 |
Target: 5'- cGGCCGCUAUGCGc--GAGGgCGCcgagaacgaagUGCa -3' miRNA: 3'- -CUGGCGGUGCGCaacCUCCgGCG-----------ACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 93077 | 0.67 | 0.595663 |
Target: 5'- aGuuGCCuAUGaCGUUGGAGugcagcguGCCGUUGCg -3' miRNA: 3'- cUggCGG-UGC-GCAACCUC--------CGGCGACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 119178 | 0.66 | 0.655828 |
Target: 5'- cGCCGCCggucccGCGCGcaaucGGCgCGCUGCg -3' miRNA: 3'- cUGGCGG------UGCGCaaccuCCG-GCGACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 36421 | 0.67 | 0.61569 |
Target: 5'- uGAUC-CU--GCGUUGG-GGCUGCUGCg -3' miRNA: 3'- -CUGGcGGugCGCAACCuCCGGCGACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 10709 | 0.67 | 0.585685 |
Target: 5'- cGCCGCCGCGCc---GAGGCCaaGC-GCa -3' miRNA: 3'- cUGGCGGUGCGcaacCUCCGG--CGaCG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 83857 | 0.69 | 0.460955 |
Target: 5'- aGGCgCGCCAgGCGcUGGAGGagCGCUacguGCg -3' miRNA: 3'- -CUG-GCGGUgCGCaACCUCCg-GCGA----CG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 85587 | 0.66 | 0.645801 |
Target: 5'- aGCCGgCAccuguugcCGCGUcGGAcGGCCGC-GCa -3' miRNA: 3'- cUGGCgGU--------GCGCAaCCU-CCGGCGaCG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 34162 | 0.66 | 0.635764 |
Target: 5'- cGGCUGCaagCACGCGUUagcgacggugcGGucGCCGCgGCg -3' miRNA: 3'- -CUGGCG---GUGCGCAA-----------CCucCGGCGaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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