miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21181 5' -60.7 NC_004778.3 + 128448 1.1 0.00073
Target:  5'- gGACCGCCACGCGUUGGAGGCCGCUGCu -3'
miRNA:   3'- -CUGGCGGUGCGCAACCUCCGGCGACG- -5'
21181 5' -60.7 NC_004778.3 + 97297 0.78 0.138858
Target:  5'- uGGCCGCgGCGCaUUGGAGcGCCGUcgUGCa -3'
miRNA:   3'- -CUGGCGgUGCGcAACCUC-CGGCG--ACG- -5'
21181 5' -60.7 NC_004778.3 + 33260 0.75 0.227431
Target:  5'- uGCCGCCguuugagcgGCGCGUggaaGAGGUCGUUGCa -3'
miRNA:   3'- cUGGCGG---------UGCGCAac--CUCCGGCGACG- -5'
21181 5' -60.7 NC_004778.3 + 30416 0.74 0.244254
Target:  5'- cGCCGCgACGCGUUGccGGgCGUUGCg -3'
miRNA:   3'- cUGGCGgUGCGCAACcuCCgGCGACG- -5'
21181 5' -60.7 NC_004778.3 + 61322 0.74 0.256034
Target:  5'- cGGCCGCUucaACGgGUUGGuGGauGCUGCg -3'
miRNA:   3'- -CUGGCGG---UGCgCAACCuCCggCGACG- -5'
21181 5' -60.7 NC_004778.3 + 85453 0.73 0.268276
Target:  5'- cGCCgGCCGCGCGUUGGGcGGCgCGCc-- -3'
miRNA:   3'- cUGG-CGGUGCGCAACCU-CCG-GCGacg -5'
21181 5' -60.7 NC_004778.3 + 23976 0.7 0.408218
Target:  5'- -uCCGuCCGagGCGcgGGAucGGCCGCUGCg -3'
miRNA:   3'- cuGGC-GGUg-CGCaaCCU--CCGGCGACG- -5'
21181 5' -60.7 NC_004778.3 + 125733 0.7 0.425381
Target:  5'- --aUGCCGCGCGUUGGuacGGCUGUccauugUGCc -3'
miRNA:   3'- cugGCGGUGCGCAACCu--CCGGCG------ACG- -5'
21181 5' -60.7 NC_004778.3 + 83857 0.69 0.460955
Target:  5'- aGGCgCGCCAgGCGcUGGAGGagCGCUacguGCg -3'
miRNA:   3'- -CUG-GCGGUgCGCaACCUCCg-GCGA----CG- -5'
21181 5' -60.7 NC_004778.3 + 107689 0.69 0.49804
Target:  5'- aACC-UUGCGCG-UGGAGGCCGCcacGCg -3'
miRNA:   3'- cUGGcGGUGCGCaACCUCCGGCGa--CG- -5'
21181 5' -60.7 NC_004778.3 + 11976 0.68 0.517078
Target:  5'- -cCCGCgACcauCGUcaacgUGGcAGGCCGCUGCc -3'
miRNA:   3'- cuGGCGgUGc--GCA-----ACC-UCCGGCGACG- -5'
21181 5' -60.7 NC_004778.3 + 32955 0.68 0.526707
Target:  5'- cACCGCCGCGUGgcUGuGcGGCCGCg-- -3'
miRNA:   3'- cUGGCGGUGCGCa-AC-CuCCGGCGacg -5'
21181 5' -60.7 NC_004778.3 + 71635 0.68 0.536401
Target:  5'- aACCaGCaAgGCGUUGGuGGCCGauaUGCa -3'
miRNA:   3'- cUGG-CGgUgCGCAACCuCCGGCg--ACG- -5'
21181 5' -60.7 NC_004778.3 + 93075 0.68 0.555969
Target:  5'- -uCUGCCAagGCGUUGGucGC-GCUGCa -3'
miRNA:   3'- cuGGCGGUg-CGCAACCucCGgCGACG- -5'
21181 5' -60.7 NC_004778.3 + 102178 0.68 0.555969
Target:  5'- uGACUGCgacuuuguggACGCGggcugugacGGAGGCCuGCUGCa -3'
miRNA:   3'- -CUGGCGg---------UGCGCaa-------CCUCCGG-CGACG- -5'
21181 5' -60.7 NC_004778.3 + 35827 0.67 0.575739
Target:  5'- cGCCGCaccaacaaGCGCcUUGGGGGCCaGUgGCg -3'
miRNA:   3'- cUGGCGg-------UGCGcAACCUCCGG-CGaCG- -5'
21181 5' -60.7 NC_004778.3 + 10709 0.67 0.585685
Target:  5'- cGCCGCCGCGCc---GAGGCCaaGC-GCa -3'
miRNA:   3'- cUGGCGGUGCGcaacCUCCGG--CGaCG- -5'
21181 5' -60.7 NC_004778.3 + 14391 0.67 0.585685
Target:  5'- cGACgGgCAgGCGUUGGGGGagCGCggacGCg -3'
miRNA:   3'- -CUGgCgGUgCGCAACCUCCg-GCGa---CG- -5'
21181 5' -60.7 NC_004778.3 + 97387 0.67 0.585685
Target:  5'- uGACCGCCAuCGUG-UGGcGGCgCGCa-- -3'
miRNA:   3'- -CUGGCGGU-GCGCaACCuCCG-GCGacg -5'
21181 5' -60.7 NC_004778.3 + 93077 0.67 0.595663
Target:  5'- aGuuGCCuAUGaCGUUGGAGugcagcguGCCGUUGCg -3'
miRNA:   3'- cUggCGG-UGC-GCAACCUC--------CGGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.