Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21181 | 5' | -60.7 | NC_004778.3 | + | 128448 | 1.1 | 0.00073 |
Target: 5'- gGACCGCCACGCGUUGGAGGCCGCUGCu -3' miRNA: 3'- -CUGGCGGUGCGCAACCUCCGGCGACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 125733 | 0.7 | 0.425381 |
Target: 5'- --aUGCCGCGCGUUGGuacGGCUGUccauugUGCc -3' miRNA: 3'- cugGCGGUGCGCAACCu--CCGGCG------ACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 119178 | 0.66 | 0.655828 |
Target: 5'- cGCCGCCggucccGCGCGcaaucGGCgCGCUGCg -3' miRNA: 3'- cUGGCGG------UGCGCaaccuCCG-GCGACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 114295 | 0.66 | 0.664836 |
Target: 5'- cGCUGCCGCgaccgauGCGUUuGAuaauGGCCGCgUGCg -3' miRNA: 3'- cUGGCGGUG-------CGCAAcCU----CCGGCG-ACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 108417 | 0.66 | 0.675818 |
Target: 5'- uGCCGCgGCGCaggUGGAcGcGCUGgUGCg -3' miRNA: 3'- cUGGCGgUGCGca-ACCU-C-CGGCgACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 107764 | 0.66 | 0.675818 |
Target: 5'- cACCGCguCGCGcucgucGGGGGCgucgCGUUGCg -3' miRNA: 3'- cUGGCGguGCGCaa----CCUCCG----GCGACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 107689 | 0.69 | 0.49804 |
Target: 5'- aACC-UUGCGCG-UGGAGGCCGCcacGCg -3' miRNA: 3'- cUGGcGGUGCGCaACCUCCGGCGa--CG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 104536 | 0.67 | 0.605667 |
Target: 5'- aGCCGUggcaacaaCACGCGcuUUGGuucGGgCGCUGCg -3' miRNA: 3'- cUGGCG--------GUGCGC--AACCu--CCgGCGACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 103425 | 0.66 | 0.655828 |
Target: 5'- uGCCGCCAUGU--UGGcGGaCGUUGCu -3' miRNA: 3'- cUGGCGGUGCGcaACCuCCgGCGACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 102178 | 0.68 | 0.555969 |
Target: 5'- uGACUGCgacuuuguggACGCGggcugugacGGAGGCCuGCUGCa -3' miRNA: 3'- -CUGGCGg---------UGCGCaa-------CCUCCGG-CGACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 100239 | 0.66 | 0.635764 |
Target: 5'- cGACUGCCGCGUGcgcgaUUGGcuGCCGa-GCg -3' miRNA: 3'- -CUGGCGGUGCGC-----AACCucCGGCgaCG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 97387 | 0.67 | 0.585685 |
Target: 5'- uGACCGCCAuCGUG-UGGcGGCgCGCa-- -3' miRNA: 3'- -CUGGCGGU-GCGCaACCuCCG-GCGacg -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 97297 | 0.78 | 0.138858 |
Target: 5'- uGGCCGCgGCGCaUUGGAGcGCCGUcgUGCa -3' miRNA: 3'- -CUGGCGgUGCGcAACCUC-CGGCG--ACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 97174 | 0.66 | 0.635764 |
Target: 5'- cGCCGCCggccagcguGCGCgGUUGGcAGGaCGCcGCg -3' miRNA: 3'- cUGGCGG---------UGCG-CAACC-UCCgGCGaCG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 95981 | 0.66 | 0.685765 |
Target: 5'- aGCaCGCCGC-CGUgcGGAcGGCCGC-GCu -3' miRNA: 3'- cUG-GCGGUGcGCAa-CCU-CCGGCGaCG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 95027 | 0.66 | 0.674821 |
Target: 5'- gGGCaCGCCGCGCuGccGGAgcagcccGGCCacgaGCUGCa -3' miRNA: 3'- -CUG-GCGGUGCG-CaaCCU-------CCGG----CGACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 94518 | 0.67 | 0.629741 |
Target: 5'- cGCCGCCGCGCacaaUGGccauGcgcuugcgguauaacGCCGCUGCc -3' miRNA: 3'- cUGGCGGUGCGca--ACCu---C---------------CGGCGACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 93077 | 0.67 | 0.595663 |
Target: 5'- aGuuGCCuAUGaCGUUGGAGugcagcguGCCGUUGCg -3' miRNA: 3'- cUggCGG-UGC-GCAACCUC--------CGGCGACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 93075 | 0.68 | 0.555969 |
Target: 5'- -uCUGCCAagGCGUUGGucGC-GCUGCa -3' miRNA: 3'- cuGGCGGUg-CGCAACCucCGgCGACG- -5' |
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21181 | 5' | -60.7 | NC_004778.3 | + | 85587 | 0.66 | 0.645801 |
Target: 5'- aGCCGgCAccuguugcCGCGUcGGAcGGCCGC-GCa -3' miRNA: 3'- cUGGCgGU--------GCGCAaCCU-CCGGCGaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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