miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21182 5' -56.9 NC_004778.3 + 92879 0.7 0.576558
Target:  5'- gAACGGCucgGCGUCcaGCUUgagCCGCAGCGa- -3'
miRNA:   3'- -UUGCUG---CGCAG--CGAAa--GGCGUCGCgu -5'
21182 5' -56.9 NC_004778.3 + 91353 0.76 0.293563
Target:  5'- uAGCGugcuguuGCGCGUCGCg--CCGCAGCgGCAu -3'
miRNA:   3'- -UUGC-------UGCGCAGCGaaaGGCGUCG-CGU- -5'
21182 5' -56.9 NC_004778.3 + 91140 0.66 0.841224
Target:  5'- -uCGGCGCGcggUCGCgugCgCGCuGGCGCAg -3'
miRNA:   3'- uuGCUGCGC---AGCGaaaG-GCG-UCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 90497 0.66 0.806782
Target:  5'- cGCGGCgGCGaccaCGCcgaUCCGCAcGCGCAg -3'
miRNA:   3'- uUGCUG-CGCa---GCGaa-AGGCGU-CGCGU- -5'
21182 5' -56.9 NC_004778.3 + 90271 0.68 0.730687
Target:  5'- gGGCGACGCGguggucgUGCgcaCCGCGGuCGUAa -3'
miRNA:   3'- -UUGCUGCGCa------GCGaaaGGCGUC-GCGU- -5'
21182 5' -56.9 NC_004778.3 + 89910 0.68 0.72068
Target:  5'- uGCG-CGCGUUGUUguaaaaaugCUGCAGUGCAu -3'
miRNA:   3'- uUGCuGCGCAGCGAaa-------GGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 86309 0.71 0.525888
Target:  5'- uGCGGCGCGcCGCggcgCCGUcgaAGCGCu -3'
miRNA:   3'- uUGCUGCGCaGCGaaa-GGCG---UCGCGu -5'
21182 5' -56.9 NC_004778.3 + 84314 0.66 0.841224
Target:  5'- cGCGGcCGgGUCGCUcUCCaCAGCGg- -3'
miRNA:   3'- uUGCU-GCgCAGCGAaAGGcGUCGCgu -5'
21182 5' -56.9 NC_004778.3 + 82226 0.71 0.556123
Target:  5'- uGACGccgUGCGUCaGCUugauuUUCUGCAGCGCGc -3'
miRNA:   3'- -UUGCu--GCGCAG-CGA-----AAGGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 81478 0.68 0.730687
Target:  5'- -cUGGCGCGU-GCUUUCgaacaaaGCGGCGCu -3'
miRNA:   3'- uuGCUGCGCAgCGAAAGg------CGUCGCGu -5'
21182 5' -56.9 NC_004778.3 + 80106 0.66 0.806782
Target:  5'- aGACGugGUGcCGCacacgUUgUGCGGCGCc -3'
miRNA:   3'- -UUGCugCGCaGCGa----AAgGCGUCGCGu -5'
21182 5' -56.9 NC_004778.3 + 79219 0.7 0.58684
Target:  5'- aAACGGCGCGUgGUga-CCGUcGCGCGc -3'
miRNA:   3'- -UUGCUGCGCAgCGaaaGGCGuCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 75365 0.66 0.824362
Target:  5'- --gGAcCGCGUCGCUUgcgUCGCuuguaugucGCGCAa -3'
miRNA:   3'- uugCU-GCGCAGCGAAa--GGCGu--------CGCGU- -5'
21182 5' -56.9 NC_004778.3 + 70270 0.7 0.597155
Target:  5'- gGACGGCGUG-CGCgg-CCGCGGCa-- -3'
miRNA:   3'- -UUGCUGCGCaGCGaaaGGCGUCGcgu -5'
21182 5' -56.9 NC_004778.3 + 68077 0.66 0.810352
Target:  5'- cGACGACGCGccggCGCcgUCCGCAcaugaagccgaaccuGCgGCGu -3'
miRNA:   3'- -UUGCUGCGCa---GCGaaAGGCGU---------------CG-CGU- -5'
21182 5' -56.9 NC_004778.3 + 67808 0.69 0.648976
Target:  5'- -uUGGCGCG-CGCUggcUgCGCGGCGCc -3'
miRNA:   3'- uuGCUGCGCaGCGAa--AgGCGUCGCGu -5'
21182 5' -56.9 NC_004778.3 + 59633 0.72 0.458062
Target:  5'- uGCGAUGUGUCGCgacaCGCGGuCGCGa -3'
miRNA:   3'- uUGCUGCGCAGCGaaagGCGUC-GCGU- -5'
21182 5' -56.9 NC_004778.3 + 57509 0.69 0.659332
Target:  5'- cAUGGCGCG-CGUgUUCCGCAaauuuuGCGCGu -3'
miRNA:   3'- uUGCUGCGCaGCGaAAGGCGU------CGCGU- -5'
21182 5' -56.9 NC_004778.3 + 56905 0.66 0.832887
Target:  5'- cAACGGaGCGUCGUccgcgCUGCuGGCGCAa -3'
miRNA:   3'- -UUGCUgCGCAGCGaaa--GGCG-UCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 56394 0.68 0.740607
Target:  5'- cGCGGCGgGUCGCUg-CCGCAaucguuuacGUGCu -3'
miRNA:   3'- uUGCUGCgCAGCGAaaGGCGU---------CGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.