miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21182 5' -56.9 NC_004778.3 + 127797 1.06 0.002722
Target:  5'- cAACGACGCGUCGCUUUCCGCAGCGCAg -3'
miRNA:   3'- -UUGCUGCGCAGCGAAAGGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 127437 0.71 0.566316
Target:  5'- -uCGACGCGauuuaaauaGCUUgcgCCGCAGCGUg -3'
miRNA:   3'- uuGCUGCGCag-------CGAAa--GGCGUCGCGu -5'
21182 5' -56.9 NC_004778.3 + 127173 0.68 0.72068
Target:  5'- ---aGCGCGUCGCggUCCggaaaccugaaGCGGCGUAc -3'
miRNA:   3'- uugcUGCGCAGCGaaAGG-----------CGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 124583 0.68 0.730687
Target:  5'- --aGGCGCGcgCGCaacuUUUuuGCAGUGCAa -3'
miRNA:   3'- uugCUGCGCa-GCG----AAAggCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 124465 0.66 0.832887
Target:  5'- aAACaACGCGcCGUggcaaugUCGCGGCGCAc -3'
miRNA:   3'- -UUGcUGCGCaGCGaaa----GGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 121433 0.66 0.824362
Target:  5'- -uCGGcCGUGUCGCcg-CCGuCGGCGCc -3'
miRNA:   3'- uuGCU-GCGCAGCGaaaGGC-GUCGCGu -5'
21182 5' -56.9 NC_004778.3 + 112858 0.69 0.679968
Target:  5'- uGCGGCGCGgugaaaaaaaGCUUUUgGgCGGCGCAg -3'
miRNA:   3'- uUGCUGCGCag--------CGAAAGgC-GUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 110810 0.67 0.788551
Target:  5'- aGGCGGCGCGcggCGUUUUuuGCucacgGGCGUg -3'
miRNA:   3'- -UUGCUGCGCa--GCGAAAggCG-----UCGCGu -5'
21182 5' -56.9 NC_004778.3 + 110102 0.67 0.788551
Target:  5'- aAACGGCGUG-CGCg--CCG-AGCGCu -3'
miRNA:   3'- -UUGCUGCGCaGCGaaaGGCgUCGCGu -5'
21182 5' -56.9 NC_004778.3 + 108396 0.69 0.638606
Target:  5'- aAACGcCGCcgaccaCGCUUuugCCGCGGCGCAg -3'
miRNA:   3'- -UUGCuGCGca----GCGAAa--GGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 107784 0.67 0.763997
Target:  5'- gGGCGuCGCGUUGCgcucgUCUGCGcuagcguuuggcaacGCGCAg -3'
miRNA:   3'- -UUGCuGCGCAGCGaa---AGGCGU---------------CGCGU- -5'
21182 5' -56.9 NC_004778.3 + 107539 0.76 0.287383
Target:  5'- uAUGcACGCGUCGCUUaCCGCAGaGCAg -3'
miRNA:   3'- uUGC-UGCGCAGCGAAaGGCGUCgCGU- -5'
21182 5' -56.9 NC_004778.3 + 106622 0.75 0.315641
Target:  5'- uAACGGCGUGUCGCaaa-CGCuGCGCAg -3'
miRNA:   3'- -UUGCUGCGCAGCGaaagGCGuCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 102727 0.67 0.785765
Target:  5'- uGCGGCG-GUuuugcgcaacaacuUGUUUUCCGCuGCGCAg -3'
miRNA:   3'- uUGCUGCgCA--------------GCGAAAGGCGuCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 98701 0.66 0.801377
Target:  5'- cAGCGACGCGaacuUucgauggcagccggcCGCgg-CCGCAGCGUg -3'
miRNA:   3'- -UUGCUGCGC----A---------------GCGaaaGGCGUCGCGu -5'
21182 5' -56.9 NC_004778.3 + 97699 0.71 0.535903
Target:  5'- uGGCGACGCGcCGCUUaaacUCCauaaAGCGCGc -3'
miRNA:   3'- -UUGCUGCGCaGCGAA----AGGcg--UCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 96756 0.7 0.617858
Target:  5'- uAGCGGCGUagaCGCgcagcugCCGCGGCGCGu -3'
miRNA:   3'- -UUGCUGCGca-GCGaaa----GGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 96073 0.72 0.480821
Target:  5'- aGACGGCGCGUCGUccgcgacgucgcCCGCGGCGa- -3'
miRNA:   3'- -UUGCUGCGCAGCGaaa---------GGCGUCGCgu -5'
21182 5' -56.9 NC_004778.3 + 94988 0.73 0.439544
Target:  5'- cGACGAgGCGUU-CUUUCCGCGcGCGCc -3'
miRNA:   3'- -UUGCUgCGCAGcGAAAGGCGU-CGCGu -5'
21182 5' -56.9 NC_004778.3 + 92909 0.69 0.648976
Target:  5'- uGCGGCGCGUCaUggUCCaaaGCGGCGCc -3'
miRNA:   3'- uUGCUGCGCAGcGaaAGG---CGUCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.