miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21182 5' -56.9 NC_004778.3 + 33444 0.68 0.730687
Target:  5'- cGGCGGCGCGaaaagCGCggccgUCCGCacggcGGCGUg -3'
miRNA:   3'- -UUGCUGCGCa----GCGaa---AGGCG-----UCGCGu -5'
21182 5' -56.9 NC_004778.3 + 32906 0.69 0.638606
Target:  5'- cACGGCGCGUgcaCGC---CCGCAGaCGCGa -3'
miRNA:   3'- uUGCUGCGCA---GCGaaaGGCGUC-GCGU- -5'
21182 5' -56.9 NC_004778.3 + 108396 0.69 0.638606
Target:  5'- aAACGcCGCcgaccaCGCUUuugCCGCGGCGCAg -3'
miRNA:   3'- -UUGCuGCGca----GCGAAa--GGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 9449 0.69 0.638606
Target:  5'- cACGGC-CGUCGUc-UCgGCGGCGCAg -3'
miRNA:   3'- uUGCUGcGCAGCGaaAGgCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 57509 0.69 0.659332
Target:  5'- cAUGGCGCG-CGUgUUCCGCAaauuuuGCGCGu -3'
miRNA:   3'- uUGCUGCGCaGCGaAAGGCGU------CGCGU- -5'
21182 5' -56.9 NC_004778.3 + 34150 0.69 0.679968
Target:  5'- cGACGACGCgGUCGC---CgGCGGCGaCAa -3'
miRNA:   3'- -UUGCUGCG-CAGCGaaaGgCGUCGC-GU- -5'
21182 5' -56.9 NC_004778.3 + 21133 0.68 0.710596
Target:  5'- -cCGACGUGcCGC--UCUGCGGCGUc -3'
miRNA:   3'- uuGCUGCGCaGCGaaAGGCGUCGCGu -5'
21182 5' -56.9 NC_004778.3 + 89910 0.68 0.72068
Target:  5'- uGCG-CGCGUUGUUguaaaaaugCUGCAGUGCAu -3'
miRNA:   3'- uUGCuGCGCAGCGAaa-------GGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 124583 0.68 0.730687
Target:  5'- --aGGCGCGcgCGCaacuUUUuuGCAGUGCAa -3'
miRNA:   3'- uugCUGCGCa-GCG----AAAggCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 27972 0.69 0.628231
Target:  5'- --aGGCGUG-CGCU--UCGCAGCGCGa -3'
miRNA:   3'- uugCUGCGCaGCGAaaGGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 25148 0.7 0.616822
Target:  5'- uGCGGCGCGUgcaaaccUGCacgUUCuUGCGGCGCAg -3'
miRNA:   3'- uUGCUGCGCA-------GCGa--AAG-GCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 70270 0.7 0.597155
Target:  5'- gGACGGCGUG-CGCgg-CCGCGGCa-- -3'
miRNA:   3'- -UUGCUGCGCaGCGaaaGGCGUCGcgu -5'
21182 5' -56.9 NC_004778.3 + 31232 0.76 0.308385
Target:  5'- --aGAgGCGUUGCUgUCCGUGGCGCGc -3'
miRNA:   3'- uugCUgCGCAGCGAaAGGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 106622 0.75 0.315641
Target:  5'- uAACGGCGUGUCGCaaa-CGCuGCGCAg -3'
miRNA:   3'- -UUGCUGCGCAGCGaaagGCGuCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 1653 0.73 0.43863
Target:  5'- aAGCGACGCGUCGUuggcaccuucgguUUgggugcggCCaGCAGCGCGa -3'
miRNA:   3'- -UUGCUGCGCAGCG-------------AAa-------GG-CGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 47392 0.73 0.439544
Target:  5'- cGCGACGUGUCGCa---CGCGcGCGCGu -3'
miRNA:   3'- uUGCUGCGCAGCGaaagGCGU-CGCGU- -5'
21182 5' -56.9 NC_004778.3 + 94988 0.73 0.439544
Target:  5'- cGACGAgGCGUU-CUUUCCGCGcGCGCc -3'
miRNA:   3'- -UUGCUgCGCAGcGAAAGGCGU-CGCGu -5'
21182 5' -56.9 NC_004778.3 + 31711 0.71 0.535903
Target:  5'- cGACGAUGCGguuUUGCUg--CGCGGCGCGc -3'
miRNA:   3'- -UUGCUGCGC---AGCGAaagGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 40527 0.71 0.556123
Target:  5'- -cCGGCGCGUCGCaUUCauUGGCGCGa -3'
miRNA:   3'- uuGCUGCGCAGCGaAAGgcGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 92879 0.7 0.576558
Target:  5'- gAACGGCucgGCGUCcaGCUUgagCCGCAGCGa- -3'
miRNA:   3'- -UUGCUG---CGCAG--CGAAa--GGCGUCGCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.