miRNA display CGI


Results 1 - 20 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21182 5' -56.9 NC_004778.3 + 84314 0.66 0.841224
Target:  5'- cGCGGcCGgGUCGCUcUCCaCAGCGg- -3'
miRNA:   3'- uUGCU-GCgCAGCGAaAGGcGUCGCgu -5'
21182 5' -56.9 NC_004778.3 + 52054 0.68 0.73764
Target:  5'- aAGCGACGCGgccggCGCgugCgcauugcaccagcgCGCGGCGCGc -3'
miRNA:   3'- -UUGCUGCGCa----GCGaaaG--------------GCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 81478 0.68 0.730687
Target:  5'- -cUGGCGCGU-GCUUUCgaacaaaGCGGCGCu -3'
miRNA:   3'- uuGCUGCGCAgCGAAAGg------CGUCGCGu -5'
21182 5' -56.9 NC_004778.3 + 127797 1.06 0.002722
Target:  5'- cAACGACGCGUCGCUUUCCGCAGCGCAg -3'
miRNA:   3'- -UUGCUGCGCAGCGAAAGGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 44145 0.66 0.832887
Target:  5'- cAugGACGCGggCGUUUgCgGCGGCGaCGg -3'
miRNA:   3'- -UugCUGCGCa-GCGAAaGgCGUCGC-GU- -5'
21182 5' -56.9 NC_004778.3 + 44115 0.66 0.832887
Target:  5'- cAugGACGCGggCGUUUgCgGCGGCGaCGg -3'
miRNA:   3'- -UugCUGCGCa-GCGAAaGgCGUCGC-GU- -5'
21182 5' -56.9 NC_004778.3 + 7827 0.66 0.824362
Target:  5'- cGACGGCGUGgacCGCgcgCUGCAGCa-- -3'
miRNA:   3'- -UUGCUGCGCa--GCGaaaGGCGUCGcgu -5'
21182 5' -56.9 NC_004778.3 + 139 0.66 0.824362
Target:  5'- uGCGGCGCG------UCCGCGGCGUAc -3'
miRNA:   3'- uUGCUGCGCagcgaaAGGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 90497 0.66 0.806782
Target:  5'- cGCGGCgGCGaccaCGCcgaUCCGCAcGCGCAg -3'
miRNA:   3'- uUGCUG-CGCa---GCGaa-AGGCGU-CGCGU- -5'
21182 5' -56.9 NC_004778.3 + 34977 0.68 0.740607
Target:  5'- uAGCGGCaCGUCGCUUgugucgaacaUuuGCAGCGgAu -3'
miRNA:   3'- -UUGCUGcGCAGCGAA----------AggCGUCGCgU- -5'
21182 5' -56.9 NC_004778.3 + 110810 0.67 0.788551
Target:  5'- aGGCGGCGCGcggCGUUUUuuGCucacgGGCGUg -3'
miRNA:   3'- -UUGCUGCGCa--GCGAAAggCG-----UCGCGu -5'
21182 5' -56.9 NC_004778.3 + 68077 0.66 0.810352
Target:  5'- cGACGACGCGccggCGCcgUCCGCAcaugaagccgaaccuGCgGCGu -3'
miRNA:   3'- -UUGCUGCGCa---GCGaaAGGCGU---------------CG-CGU- -5'
21182 5' -56.9 NC_004778.3 + 8029 0.66 0.841224
Target:  5'- -cCGACGCGUgccUGCUgcucagCCGCAcGUGCc -3'
miRNA:   3'- uuGCUGCGCA---GCGAaa----GGCGU-CGCGu -5'
21182 5' -56.9 NC_004778.3 + 102727 0.67 0.785765
Target:  5'- uGCGGCG-GUuuugcgcaacaacuUGUUUUCCGCuGCGCAg -3'
miRNA:   3'- uUGCUGCgCA--------------GCGAAAGGCGuCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 91140 0.66 0.841224
Target:  5'- -uCGGCGCGcggUCGCgugCgCGCuGGCGCAg -3'
miRNA:   3'- uuGCUGCGC---AGCGaaaG-GCG-UCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 75365 0.66 0.824362
Target:  5'- --gGAcCGCGUCGCUUgcgUCGCuuguaugucGCGCAa -3'
miRNA:   3'- uugCU-GCGCAGCGAAa--GGCGu--------CGCGU- -5'
21182 5' -56.9 NC_004778.3 + 30548 0.67 0.779214
Target:  5'- gGGCGAguUGUGUCGCUUcgaaagcCCGCGugccGCGCAa -3'
miRNA:   3'- -UUGCU--GCGCAGCGAAa------GGCGU----CGCGU- -5'
21182 5' -56.9 NC_004778.3 + 90271 0.68 0.730687
Target:  5'- gGGCGACGCGguggucgUGCgcaCCGCGGuCGUAa -3'
miRNA:   3'- -UUGCUGCGCa------GCGaaaGGCGUC-GCGU- -5'
21182 5' -56.9 NC_004778.3 + 124465 0.66 0.832887
Target:  5'- aAACaACGCGcCGUggcaaugUCGCGGCGCAc -3'
miRNA:   3'- -UUGcUGCGCaGCGaaa----GGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 30419 0.66 0.832887
Target:  5'- cGCGACGCGUUGCcgggcgUUGCGGCa-- -3'
miRNA:   3'- uUGCUGCGCAGCGaaa---GGCGUCGcgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.