miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21182 5' -56.9 NC_004778.3 + 57 0.68 0.700442
Target:  5'- --gGGCGCGUCGa---CCGC-GCGCAa -3'
miRNA:   3'- uugCUGCGCAGCgaaaGGCGuCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 139 0.66 0.824362
Target:  5'- uGCGGCGCG------UCCGCGGCGUAc -3'
miRNA:   3'- uUGCUGCGCagcgaaAGGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 1653 0.73 0.43863
Target:  5'- aAGCGACGCGUCGUuggcaccuucgguUUgggugcggCCaGCAGCGCGa -3'
miRNA:   3'- -UUGCUGCGCAGCG-------------AAa-------GG-CGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 7827 0.66 0.824362
Target:  5'- cGACGGCGUGgacCGCgcgCUGCAGCa-- -3'
miRNA:   3'- -UUGCUGCGCa--GCGaaaGGCGUCGcgu -5'
21182 5' -56.9 NC_004778.3 + 7899 0.76 0.280636
Target:  5'- cGugGGCGUGUUGCUggCCGgCGGCGCu -3'
miRNA:   3'- -UugCUGCGCAGCGAaaGGC-GUCGCGu -5'
21182 5' -56.9 NC_004778.3 + 8029 0.66 0.841224
Target:  5'- -cCGACGCGUgccUGCUgcucagCCGCAcGUGCc -3'
miRNA:   3'- uuGCUGCGCA---GCGAaa----GGCGU-CGCGu -5'
21182 5' -56.9 NC_004778.3 + 9449 0.69 0.638606
Target:  5'- cACGGC-CGUCGUc-UCgGCGGCGCAg -3'
miRNA:   3'- uUGCUGcGCAGCGaaAGgCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 17093 0.67 0.788551
Target:  5'- cAAgGcCGUGUUGCUgugCgCGCGGCGCGc -3'
miRNA:   3'- -UUgCuGCGCAGCGAaa-G-GCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 21133 0.68 0.710596
Target:  5'- -cCGACGUGcCGC--UCUGCGGCGUc -3'
miRNA:   3'- uuGCUGCGCaGCGaaAGGCGUCGCGu -5'
21182 5' -56.9 NC_004778.3 + 21691 0.69 0.659332
Target:  5'- cGCGACGCGgUGCUgcggUCCa-AGCGCAg -3'
miRNA:   3'- uUGCUGCGCaGCGAa---AGGcgUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 24970 0.68 0.69023
Target:  5'- -uCGAgGUGUUGCa---CGCAGCGCAg -3'
miRNA:   3'- uuGCUgCGCAGCGaaagGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 25148 0.7 0.616822
Target:  5'- uGCGGCGCGUgcaaaccUGCacgUUCuUGCGGCGCAg -3'
miRNA:   3'- uUGCUGCGCA-------GCGa--AAG-GCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 26962 0.66 0.824362
Target:  5'- gGACGcGCGUGUCGCgcgUCUGCuacaacCGCAa -3'
miRNA:   3'- -UUGC-UGCGCAGCGaa-AGGCGuc----GCGU- -5'
21182 5' -56.9 NC_004778.3 + 27972 0.69 0.628231
Target:  5'- --aGGCGUG-CGCU--UCGCAGCGCGa -3'
miRNA:   3'- uugCUGCGCaGCGAaaGGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 30419 0.66 0.832887
Target:  5'- cGCGACGCGUUGCcgggcgUUGCGGCa-- -3'
miRNA:   3'- uUGCUGCGCAGCGaaa---GGCGUCGcgu -5'
21182 5' -56.9 NC_004778.3 + 30548 0.67 0.779214
Target:  5'- gGGCGAguUGUGUCGCUUcgaaagcCCGCGugccGCGCAa -3'
miRNA:   3'- -UUGCU--GCGCAGCGAAa------GGCGU----CGCGU- -5'
21182 5' -56.9 NC_004778.3 + 31232 0.76 0.308385
Target:  5'- --aGAgGCGUUGCUgUCCGUGGCGCGc -3'
miRNA:   3'- uugCUgCGCAGCGAaAGGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 31711 0.71 0.535903
Target:  5'- cGACGAUGCGguuUUGCUg--CGCGGCGCGc -3'
miRNA:   3'- -UUGCUGCGC---AGCGAaagGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 32906 0.69 0.638606
Target:  5'- cACGGCGCGUgcaCGC---CCGCAGaCGCGa -3'
miRNA:   3'- uUGCUGCGCA---GCGaaaGGCGUC-GCGU- -5'
21182 5' -56.9 NC_004778.3 + 32981 0.66 0.796831
Target:  5'- -uCGACGUGUguacguuUGCguccUUCCGCGuGCGCAu -3'
miRNA:   3'- uuGCUGCGCA-------GCGa---AAGGCGU-CGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.