miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21182 5' -56.9 NC_004778.3 + 127797 1.06 0.002722
Target:  5'- cAACGACGCGUCGCUUUCCGCAGCGCAg -3'
miRNA:   3'- -UUGCUGCGCAGCGAAAGGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 7899 0.76 0.280636
Target:  5'- cGugGGCGUGUUGCUggCCGgCGGCGCu -3'
miRNA:   3'- -UugCUGCGCAGCGAaaGGC-GUCGCGu -5'
21182 5' -56.9 NC_004778.3 + 107539 0.76 0.287383
Target:  5'- uAUGcACGCGUCGCUUaCCGCAGaGCAg -3'
miRNA:   3'- uUGC-UGCGCAGCGAAaGGCGUCgCGU- -5'
21182 5' -56.9 NC_004778.3 + 91353 0.76 0.293563
Target:  5'- uAGCGugcuguuGCGCGUCGCg--CCGCAGCgGCAu -3'
miRNA:   3'- -UUGC-------UGCGCAGCGaaaGGCGUCG-CGU- -5'
21182 5' -56.9 NC_004778.3 + 31232 0.76 0.308385
Target:  5'- --aGAgGCGUUGCUgUCCGUGGCGCGc -3'
miRNA:   3'- uugCUgCGCAGCGAaAGGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 106622 0.75 0.315641
Target:  5'- uAACGGCGUGUCGCaaa-CGCuGCGCAg -3'
miRNA:   3'- -UUGCUGCGCAGCGaaagGCGuCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 36639 0.73 0.421461
Target:  5'- aAACGGCGCuGgcgCGCUccgUUCCGguGUGCAu -3'
miRNA:   3'- -UUGCUGCG-Ca--GCGA---AAGGCguCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 1653 0.73 0.43863
Target:  5'- aAGCGACGCGUCGUuggcaccuucgguUUgggugcggCCaGCAGCGCGa -3'
miRNA:   3'- -UUGCUGCGCAGCG-------------AAa-------GG-CGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 47392 0.73 0.439544
Target:  5'- cGCGACGUGUCGCa---CGCGcGCGCGu -3'
miRNA:   3'- uUGCUGCGCAGCGaaagGCGU-CGCGU- -5'
21182 5' -56.9 NC_004778.3 + 94988 0.73 0.439544
Target:  5'- cGACGAgGCGUU-CUUUCCGCGcGCGCc -3'
miRNA:   3'- -UUGCUgCGCAGcGAAAGGCGU-CGCGu -5'
21182 5' -56.9 NC_004778.3 + 59633 0.72 0.458062
Target:  5'- uGCGAUGUGUCGCgacaCGCGGuCGCGa -3'
miRNA:   3'- uUGCUGCGCAGCGaaagGCGUC-GCGU- -5'
21182 5' -56.9 NC_004778.3 + 96073 0.72 0.480821
Target:  5'- aGACGGCGCGUCGUccgcgacgucgcCCGCGGCGa- -3'
miRNA:   3'- -UUGCUGCGCAGCGaaa---------GGCGUCGCgu -5'
21182 5' -56.9 NC_004778.3 + 86309 0.71 0.525888
Target:  5'- uGCGGCGCGcCGCggcgCCGUcgaAGCGCu -3'
miRNA:   3'- uUGCUGCGCaGCGaaa-GGCG---UCGCGu -5'
21182 5' -56.9 NC_004778.3 + 97699 0.71 0.535903
Target:  5'- uGGCGACGCGcCGCUUaaacUCCauaaAGCGCGc -3'
miRNA:   3'- -UUGCUGCGCaGCGAA----AGGcg--UCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 31711 0.71 0.535903
Target:  5'- cGACGAUGCGguuUUGCUg--CGCGGCGCGc -3'
miRNA:   3'- -UUGCUGCGC---AGCGAaagGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 82226 0.71 0.556123
Target:  5'- uGACGccgUGCGUCaGCUugauuUUCUGCAGCGCGc -3'
miRNA:   3'- -UUGCu--GCGCAG-CGA-----AAGGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 40527 0.71 0.556123
Target:  5'- -cCGGCGCGUCGCaUUCauUGGCGCGa -3'
miRNA:   3'- uuGCUGCGCAGCGaAAGgcGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 127437 0.71 0.566316
Target:  5'- -uCGACGCGauuuaaauaGCUUgcgCCGCAGCGUg -3'
miRNA:   3'- uuGCUGCGCag-------CGAAa--GGCGUCGCGu -5'
21182 5' -56.9 NC_004778.3 + 92879 0.7 0.576558
Target:  5'- gAACGGCucgGCGUCcaGCUUgagCCGCAGCGa- -3'
miRNA:   3'- -UUGCUG---CGCAG--CGAAa--GGCGUCGCgu -5'
21182 5' -56.9 NC_004778.3 + 34179 0.7 0.58684
Target:  5'- uAGCGACG-GUgCGgUcgCCGCGGCGCAc -3'
miRNA:   3'- -UUGCUGCgCA-GCgAaaGGCGUCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.