miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21182 5' -56.9 NC_004778.3 + 24970 0.68 0.69023
Target:  5'- -uCGAgGUGUUGCa---CGCAGCGCAg -3'
miRNA:   3'- uuGCUgCGCAGCGaaagGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 57 0.68 0.700442
Target:  5'- --gGGCGCGUCGa---CCGC-GCGCAa -3'
miRNA:   3'- uugCUGCGCAGCgaaaGGCGuCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 34977 0.68 0.740607
Target:  5'- uAGCGGCaCGUCGCUUgugucgaacaUuuGCAGCGgAu -3'
miRNA:   3'- -UUGCUGcGCAGCGAA----------AggCGUCGCgU- -5'
21182 5' -56.9 NC_004778.3 + 68077 0.66 0.810352
Target:  5'- cGACGACGCGccggCGCcgUCCGCAcaugaagccgaaccuGCgGCGu -3'
miRNA:   3'- -UUGCUGCGCa---GCGaaAGGCGU---------------CG-CGU- -5'
21182 5' -56.9 NC_004778.3 + 97699 0.71 0.535903
Target:  5'- uGGCGACGCGcCGCUUaaacUCCauaaAGCGCGc -3'
miRNA:   3'- -UUGCUGCGCaGCGAA----AGGcg--UCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 40742 0.69 0.638606
Target:  5'- gAGCGcACGCGcCGCUUgcUgCGCGGCGaCAu -3'
miRNA:   3'- -UUGC-UGCGCaGCGAA--AgGCGUCGC-GU- -5'
21182 5' -56.9 NC_004778.3 + 81478 0.68 0.730687
Target:  5'- -cUGGCGCGU-GCUUUCgaacaaaGCGGCGCu -3'
miRNA:   3'- uuGCUGCGCAgCGAAAGg------CGUCGCGu -5'
21182 5' -56.9 NC_004778.3 + 75365 0.66 0.824362
Target:  5'- --gGAcCGCGUCGCUUgcgUCGCuuguaugucGCGCAa -3'
miRNA:   3'- uugCU-GCGCAGCGAAa--GGCGu--------CGCGU- -5'
21182 5' -56.9 NC_004778.3 + 67808 0.69 0.648976
Target:  5'- -uUGGCGCG-CGCUggcUgCGCGGCGCc -3'
miRNA:   3'- uuGCUGCGCaGCGAa--AgGCGUCGCGu -5'
21182 5' -56.9 NC_004778.3 + 139 0.66 0.824362
Target:  5'- uGCGGCGCG------UCCGCGGCGUAc -3'
miRNA:   3'- uUGCUGCGCagcgaaAGGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 127173 0.68 0.72068
Target:  5'- ---aGCGCGUCGCggUCCggaaaccugaaGCGGCGUAc -3'
miRNA:   3'- uugcUGCGCAGCGaaAGG-----------CGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 112858 0.69 0.679968
Target:  5'- uGCGGCGCGgugaaaaaaaGCUUUUgGgCGGCGCAg -3'
miRNA:   3'- uUGCUGCGCag--------CGAAAGgC-GUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 90271 0.68 0.730687
Target:  5'- gGGCGACGCGguggucgUGCgcaCCGCGGuCGUAa -3'
miRNA:   3'- -UUGCUGCGCa------GCGaaaGGCGUC-GCGU- -5'
21182 5' -56.9 NC_004778.3 + 52054 0.68 0.73764
Target:  5'- aAGCGACGCGgccggCGCgugCgcauugcaccagcgCGCGGCGCGc -3'
miRNA:   3'- -UUGCUGCGCa----GCGaaaG--------------GCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 102727 0.67 0.785765
Target:  5'- uGCGGCG-GUuuugcgcaacaacuUGUUUUCCGCuGCGCAg -3'
miRNA:   3'- uUGCUGCgCA--------------GCGAAAGGCGuCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 90497 0.66 0.806782
Target:  5'- cGCGGCgGCGaccaCGCcgaUCCGCAcGCGCAg -3'
miRNA:   3'- uUGCUG-CGCa---GCGaa-AGGCGU-CGCGU- -5'
21182 5' -56.9 NC_004778.3 + 36639 0.73 0.421461
Target:  5'- aAACGGCGCuGgcgCGCUccgUUCCGguGUGCAu -3'
miRNA:   3'- -UUGCUGCG-Ca--GCGA---AAGGCguCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 86309 0.71 0.525888
Target:  5'- uGCGGCGCGcCGCggcgCCGUcgaAGCGCu -3'
miRNA:   3'- uUGCUGCGCaGCGaaa-GGCG---UCGCGu -5'
21182 5' -56.9 NC_004778.3 + 34031 0.7 0.58684
Target:  5'- uAGCG-CGCGUCGCUaagCUGCGacGCGCu -3'
miRNA:   3'- -UUGCuGCGCAGCGAaa-GGCGU--CGCGu -5'
21182 5' -56.9 NC_004778.3 + 96756 0.7 0.617858
Target:  5'- uAGCGGCGUagaCGCgcagcugCCGCGGCGCGu -3'
miRNA:   3'- -UUGCUGCGca-GCGaaa----GGCGUCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.