miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21182 5' -56.9 NC_004778.3 + 110102 0.67 0.788551
Target:  5'- aAACGGCGUG-CGCg--CCG-AGCGCu -3'
miRNA:   3'- -UUGCUGCGCaGCGaaaGGCgUCGCGu -5'
21182 5' -56.9 NC_004778.3 + 17093 0.67 0.788551
Target:  5'- cAAgGcCGUGUUGCUgugCgCGCGGCGCGc -3'
miRNA:   3'- -UUgCuGCGCAGCGAaa-G-GCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 102727 0.67 0.785765
Target:  5'- uGCGGCG-GUuuugcgcaacaacuUGUUUUCCGCuGCGCAg -3'
miRNA:   3'- uUGCUGCgCA--------------GCGAAAGGCGuCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 30548 0.67 0.779214
Target:  5'- gGGCGAguUGUGUCGCUUcgaaagcCCGCGugccGCGCAa -3'
miRNA:   3'- -UUGCU--GCGCAGCGAAa------GGCGU----CGCGU- -5'
21182 5' -56.9 NC_004778.3 + 40075 0.67 0.779214
Target:  5'- cAACGAgGUGUCGU----CGCAGUGCGu -3'
miRNA:   3'- -UUGCUgCGCAGCGaaagGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 107784 0.67 0.763997
Target:  5'- gGGCGuCGCGUUGCgcucgUCUGCGcuagcguuuggcaacGCGCAg -3'
miRNA:   3'- -UUGCuGCGCAGCGaa---AGGCGU---------------CGCGU- -5'
21182 5' -56.9 NC_004778.3 + 54140 0.67 0.760143
Target:  5'- -cUGAcCGCGUCGCUggCCGaaaaGGaCGCAg -3'
miRNA:   3'- uuGCU-GCGCAGCGAaaGGCg---UC-GCGU- -5'
21182 5' -56.9 NC_004778.3 + 43111 0.68 0.740607
Target:  5'- cGGCGGCugcuGCGcaagCGCUUcgacggcgCCGCGGCGCGc -3'
miRNA:   3'- -UUGCUG----CGCa---GCGAAa-------GGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 56394 0.68 0.740607
Target:  5'- cGCGGCGgGUCGCUg-CCGCAaucguuuacGUGCu -3'
miRNA:   3'- uUGCUGCgCAGCGAaaGGCGU---------CGCGu -5'
21182 5' -56.9 NC_004778.3 + 34977 0.68 0.740607
Target:  5'- uAGCGGCaCGUCGCUUgugucgaacaUuuGCAGCGgAu -3'
miRNA:   3'- -UUGCUGcGCAGCGAA----------AggCGUCGCgU- -5'
21182 5' -56.9 NC_004778.3 + 52054 0.68 0.73764
Target:  5'- aAGCGACGCGgccggCGCgugCgcauugcaccagcgCGCGGCGCGc -3'
miRNA:   3'- -UUGCUGCGCa----GCGaaaG--------------GCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 33444 0.68 0.730687
Target:  5'- cGGCGGCGCGaaaagCGCggccgUCCGCacggcGGCGUg -3'
miRNA:   3'- -UUGCUGCGCa----GCGaa---AGGCG-----UCGCGu -5'
21182 5' -56.9 NC_004778.3 + 90271 0.68 0.730687
Target:  5'- gGGCGACGCGguggucgUGCgcaCCGCGGuCGUAa -3'
miRNA:   3'- -UUGCUGCGCa------GCGaaaGGCGUC-GCGU- -5'
21182 5' -56.9 NC_004778.3 + 81478 0.68 0.730687
Target:  5'- -cUGGCGCGU-GCUUUCgaacaaaGCGGCGCu -3'
miRNA:   3'- uuGCUGCGCAgCGAAAGg------CGUCGCGu -5'
21182 5' -56.9 NC_004778.3 + 124583 0.68 0.730687
Target:  5'- --aGGCGCGcgCGCaacuUUUuuGCAGUGCAa -3'
miRNA:   3'- uugCUGCGCa-GCG----AAAggCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 89910 0.68 0.72068
Target:  5'- uGCG-CGCGUUGUUguaaaaaugCUGCAGUGCAu -3'
miRNA:   3'- uUGCuGCGCAGCGAaa-------GGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 127173 0.68 0.72068
Target:  5'- ---aGCGCGUCGCggUCCggaaaccugaaGCGGCGUAc -3'
miRNA:   3'- uugcUGCGCAGCGaaAGG-----------CGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 21133 0.68 0.710596
Target:  5'- -cCGACGUGcCGC--UCUGCGGCGUc -3'
miRNA:   3'- uuGCUGCGCaGCGaaAGGCGUCGCGu -5'
21182 5' -56.9 NC_004778.3 + 57 0.68 0.700442
Target:  5'- --gGGCGCGUCGa---CCGC-GCGCAa -3'
miRNA:   3'- uugCUGCGCAGCgaaaGGCGuCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 24970 0.68 0.69023
Target:  5'- -uCGAgGUGUUGCa---CGCAGCGCAg -3'
miRNA:   3'- uuGCUgCGCAGCGaaagGCGUCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.