miRNA display CGI


Results 41 - 60 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21182 5' -56.9 NC_004778.3 + 34150 0.69 0.679968
Target:  5'- cGACGACGCgGUCGC---CgGCGGCGaCAa -3'
miRNA:   3'- -UUGCUGCG-CAGCGaaaGgCGUCGC-GU- -5'
21182 5' -56.9 NC_004778.3 + 112858 0.69 0.679968
Target:  5'- uGCGGCGCGgugaaaaaaaGCUUUUgGgCGGCGCAg -3'
miRNA:   3'- uUGCUGCGCag--------CGAAAGgC-GUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 21691 0.69 0.659332
Target:  5'- cGCGACGCGgUGCUgcggUCCa-AGCGCAg -3'
miRNA:   3'- uUGCUGCGCaGCGAa---AGGcgUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 57509 0.69 0.659332
Target:  5'- cAUGGCGCG-CGUgUUCCGCAaauuuuGCGCGu -3'
miRNA:   3'- uUGCUGCGCaGCGaAAGGCGU------CGCGU- -5'
21182 5' -56.9 NC_004778.3 + 92909 0.69 0.648976
Target:  5'- uGCGGCGCGUCaUggUCCaaaGCGGCGCc -3'
miRNA:   3'- uUGCUGCGCAGcGaaAGG---CGUCGCGu -5'
21182 5' -56.9 NC_004778.3 + 67808 0.69 0.648976
Target:  5'- -uUGGCGCG-CGCUggcUgCGCGGCGCc -3'
miRNA:   3'- uuGCUGCGCaGCGAa--AgGCGUCGCGu -5'
21182 5' -56.9 NC_004778.3 + 9449 0.69 0.638606
Target:  5'- cACGGC-CGUCGUc-UCgGCGGCGCAg -3'
miRNA:   3'- uUGCUGcGCAGCGaaAGgCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 108396 0.69 0.638606
Target:  5'- aAACGcCGCcgaccaCGCUUuugCCGCGGCGCAg -3'
miRNA:   3'- -UUGCuGCGca----GCGAAa--GGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 32906 0.69 0.638606
Target:  5'- cACGGCGCGUgcaCGC---CCGCAGaCGCGa -3'
miRNA:   3'- uUGCUGCGCA---GCGaaaGGCGUC-GCGU- -5'
21182 5' -56.9 NC_004778.3 + 40742 0.69 0.638606
Target:  5'- gAGCGcACGCGcCGCUUgcUgCGCGGCGaCAu -3'
miRNA:   3'- -UUGC-UGCGCaGCGAA--AgGCGUCGC-GU- -5'
21182 5' -56.9 NC_004778.3 + 27972 0.69 0.628231
Target:  5'- --aGGCGUG-CGCU--UCGCAGCGCGa -3'
miRNA:   3'- uugCUGCGCaGCGAaaGGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 96756 0.7 0.617858
Target:  5'- uAGCGGCGUagaCGCgcagcugCCGCGGCGCGu -3'
miRNA:   3'- -UUGCUGCGca-GCGaaa----GGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 25148 0.7 0.616822
Target:  5'- uGCGGCGCGUgcaaaccUGCacgUUCuUGCGGCGCAg -3'
miRNA:   3'- uUGCUGCGCA-------GCGa--AAG-GCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 70270 0.7 0.597155
Target:  5'- gGACGGCGUG-CGCgg-CCGCGGCa-- -3'
miRNA:   3'- -UUGCUGCGCaGCGaaaGGCGUCGcgu -5'
21182 5' -56.9 NC_004778.3 + 79219 0.7 0.58684
Target:  5'- aAACGGCGCGUgGUga-CCGUcGCGCGc -3'
miRNA:   3'- -UUGCUGCGCAgCGaaaGGCGuCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 34179 0.7 0.58684
Target:  5'- uAGCGACG-GUgCGgUcgCCGCGGCGCAc -3'
miRNA:   3'- -UUGCUGCgCA-GCgAaaGGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 34031 0.7 0.58684
Target:  5'- uAGCG-CGCGUCGCUaagCUGCGacGCGCu -3'
miRNA:   3'- -UUGCuGCGCAGCGAaa-GGCGU--CGCGu -5'
21182 5' -56.9 NC_004778.3 + 92879 0.7 0.576558
Target:  5'- gAACGGCucgGCGUCcaGCUUgagCCGCAGCGa- -3'
miRNA:   3'- -UUGCUG---CGCAG--CGAAa--GGCGUCGCgu -5'
21182 5' -56.9 NC_004778.3 + 127437 0.71 0.566316
Target:  5'- -uCGACGCGauuuaaauaGCUUgcgCCGCAGCGUg -3'
miRNA:   3'- uuGCUGCGCag-------CGAAa--GGCGUCGCGu -5'
21182 5' -56.9 NC_004778.3 + 40527 0.71 0.556123
Target:  5'- -cCGGCGCGUCGCaUUCauUGGCGCGa -3'
miRNA:   3'- uuGCUGCGCAGCGaAAGgcGUCGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.