miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21183 5' -47.6 NC_004778.3 + 127541 1.14 0.008351
Target:  5'- cGGCGGUUAUAAUCAAACCUGCAGCGGc -3'
miRNA:   3'- -CCGCCAAUAUUAGUUUGGACGUCGCC- -5'
21183 5' -47.6 NC_004778.3 + 81799 0.78 0.768142
Target:  5'- gGGCGGcgucUGUAAcCAGAacuCCUGCGGCGGc -3'
miRNA:   3'- -CCGCCa---AUAUUaGUUU---GGACGUCGCC- -5'
21183 5' -47.6 NC_004778.3 + 76450 0.75 0.875874
Target:  5'- cGGCGGUUGcGGcgGGGCCUGCGGCc- -3'
miRNA:   3'- -CCGCCAAUaUUagUUUGGACGUCGcc -5'
21183 5' -47.6 NC_004778.3 + 76533 0.75 0.897778
Target:  5'- cGGCGacGUUGUAAUCGuACCUGUAGUu- -3'
miRNA:   3'- -CCGC--CAAUAUUAGUuUGGACGUCGcc -5'
21183 5' -47.6 NC_004778.3 + 85728 0.72 0.957591
Target:  5'- cGGCGcccccGUAAUUAAGCUUGCAGCa- -3'
miRNA:   3'- -CCGCcaa--UAUUAGUUUGGACGUCGcc -5'
21183 5' -47.6 NC_004778.3 + 90234 0.72 0.967414
Target:  5'- aGGCGGUcg-AGUCGcuuagcgccugcauGACC-GUAGCGGg -3'
miRNA:   3'- -CCGCCAauaUUAGU--------------UUGGaCGUCGCC- -5'
21183 5' -47.6 NC_004778.3 + 63495 0.72 0.968396
Target:  5'- gGGCGGaUUcgGGcUC-AugCUGCGGCGGc -3'
miRNA:   3'- -CCGCC-AAuaUU-AGuUugGACGUCGCC- -5'
21183 5' -47.6 NC_004778.3 + 121241 0.71 0.971518
Target:  5'- uGCGGcg--AGUCgGggUCUGCGGCGGg -3'
miRNA:   3'- cCGCCaauaUUAG-UuuGGACGUCGCC- -5'
21183 5' -47.6 NC_004778.3 + 76330 0.71 0.974411
Target:  5'- cGGCGGUugcUGUGGcggCGGuugCUGCGGCGGc -3'
miRNA:   3'- -CCGCCA---AUAUUa--GUUug-GACGUCGCC- -5'
21183 5' -47.6 NC_004778.3 + 34978 0.7 0.987469
Target:  5'- aGCGGcacgucgcUUGU-GUCGAACauuUGCAGCGGa -3'
miRNA:   3'- cCGCC--------AAUAuUAGUUUGg--ACGUCGCC- -5'
21183 5' -47.6 NC_004778.3 + 121384 0.7 0.989017
Target:  5'- cGCGuUUAUGAUC-AGCCcGCGGCGa -3'
miRNA:   3'- cCGCcAAUAUUAGuUUGGaCGUCGCc -5'
21183 5' -47.6 NC_004778.3 + 8128 0.69 0.989872
Target:  5'- cGGCGcagcug--CAAGCCaucUGCAGCGGg -3'
miRNA:   3'- -CCGCcaauauuaGUUUGG---ACGUCGCC- -5'
21183 5' -47.6 NC_004778.3 + 76375 0.69 0.990144
Target:  5'- cGGCGGUUGcugcggcggCGGuugCUGCGGCGGc -3'
miRNA:   3'- -CCGCCAAUauua-----GUUug-GACGUCGCC- -5'
21183 5' -47.6 NC_004778.3 + 124349 0.69 0.990412
Target:  5'- aGGCGGcgaccgcgAAgacCGGACCgGCGGCGGc -3'
miRNA:   3'- -CCGCCaaua----UUa--GUUUGGaCGUCGCC- -5'
21183 5' -47.6 NC_004778.3 + 93704 0.69 0.992782
Target:  5'- cGCGGccgagcUAGUCAucGACUUGguGCGGc -3'
miRNA:   3'- cCGCCaau---AUUAGU--UUGGACguCGCC- -5'
21183 5' -47.6 NC_004778.3 + 43992 0.69 0.992782
Target:  5'- aGGCGGUgauuggCGAcCCUGCuGCGu -3'
miRNA:   3'- -CCGCCAauauuaGUUuGGACGuCGCc -5'
21183 5' -47.6 NC_004778.3 + 25150 0.69 0.994577
Target:  5'- cGGCGcGUg-----CAAACCUGCAcguucuuGCGGc -3'
miRNA:   3'- -CCGC-CAauauuaGUUUGGACGU-------CGCC- -5'
21183 5' -47.6 NC_004778.3 + 16291 0.69 0.99466
Target:  5'- cGCGGUUGUAAaCGuGCCgGCAGgCGu -3'
miRNA:   3'- cCGCCAAUAUUaGUuUGGaCGUC-GCc -5'
21183 5' -47.6 NC_004778.3 + 126978 0.68 0.996719
Target:  5'- aGCGG--GUGGUCGAuaACCaGCGGCGu -3'
miRNA:   3'- cCGCCaaUAUUAGUU--UGGaCGUCGCc -5'
21183 5' -47.6 NC_004778.3 + 12416 0.68 0.996719
Target:  5'- cGuCGGUguucGUGGUCGuGCCgGUGGCGGg -3'
miRNA:   3'- cC-GCCAa---UAUUAGUuUGGaCGUCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.