miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21183 5' -47.6 NC_004778.3 + 94240 0.68 0.997238
Target:  5'- cGGCGGgcgccaaAGUCAAGCUgcguuUGCAGUGc -3'
miRNA:   3'- -CCGCCaaua---UUAGUUUGG-----ACGUCGCc -5'
21183 5' -47.6 NC_004778.3 + 97142 0.67 0.998403
Target:  5'- cGCGGUguUGAUCGcgAACUUGguGCa- -3'
miRNA:   3'- cCGCCAauAUUAGU--UUGGACguCGcc -5'
21183 5' -47.6 NC_004778.3 + 46714 0.67 0.999141
Target:  5'- uGGCGccgcaGUUGUAAUUguAAACCcucuuauaguagcggGCAGCGGc -3'
miRNA:   3'- -CCGC-----CAAUAUUAG--UUUGGa--------------CGUCGCC- -5'
21183 5' -47.6 NC_004778.3 + 44073 0.66 0.999291
Target:  5'- cGGCGGcgAUGucauggacgCGGGCguUUGCGGCGGc -3'
miRNA:   3'- -CCGCCaaUAUua-------GUUUG--GACGUCGCC- -5'
21183 5' -47.6 NC_004778.3 + 94816 0.66 0.999291
Target:  5'- uGCGGUggAUGcgGUCuugcGCCUGCAguucgaucuGCGGg -3'
miRNA:   3'- cCGCCAa-UAU--UAGuu--UGGACGU---------CGCC- -5'
21183 5' -47.6 NC_004778.3 + 91281 0.66 0.999291
Target:  5'- cGCGGguagcgUGgagguGUCGAGCggcGCAGCGGg -3'
miRNA:   3'- cCGCCa-----AUau---UAGUUUGga-CGUCGCC- -5'
21183 5' -47.6 NC_004778.3 + 76420 0.66 0.999639
Target:  5'- cGGCGGUU--------GCUgugGCGGCGGu -3'
miRNA:   3'- -CCGCCAAuauuaguuUGGa--CGUCGCC- -5'
21183 5' -47.6 NC_004778.3 + 12932 0.66 0.999639
Target:  5'- uGCGGUagcAGUC-AACCgcGUAGCGGu -3'
miRNA:   3'- cCGCCAauaUUAGuUUGGa-CGUCGCC- -5'
21183 5' -47.6 NC_004778.3 + 99930 0.66 0.999639
Target:  5'- cGGC-GUUGUAAUUAAAaaCUGguGCGa -3'
miRNA:   3'- -CCGcCAAUAUUAGUUUg-GACguCGCc -5'
21183 5' -47.6 NC_004778.3 + 112410 0.66 0.999671
Target:  5'- aGGCGGcacguaGUAAUCAucuucgcucgacgcgGGCC-GCAGCGu -3'
miRNA:   3'- -CCGCCaa----UAUUAGU---------------UUGGaCGUCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.