Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 21183 | 5' | -47.6 | NC_004778.3 | + | 94240 | 0.68 | 0.997238 |
|
Target: 5'- cGGCGGgcgccaaAGUCAAGCUgcguuUGCAGUGc -3' miRNA: 3'- -CCGCCaaua---UUAGUUUGG-----ACGUCGCc -5' |
|||||||
| 21183 | 5' | -47.6 | NC_004778.3 | + | 94816 | 0.66 | 0.999291 |
|
Target: 5'- uGCGGUggAUGcgGUCuugcGCCUGCAguucgaucuGCGGg -3' miRNA: 3'- cCGCCAa-UAU--UAGuu--UGGACGU---------CGCC- -5' |
|||||||
| 21183 | 5' | -47.6 | NC_004778.3 | + | 97142 | 0.67 | 0.998403 |
|
Target: 5'- cGCGGUguUGAUCGcgAACUUGguGCa- -3' miRNA: 3'- cCGCCAauAUUAGU--UUGGACguCGcc -5' |
|||||||
| 21183 | 5' | -47.6 | NC_004778.3 | + | 99930 | 0.66 | 0.999639 |
|
Target: 5'- cGGC-GUUGUAAUUAAAaaCUGguGCGa -3' miRNA: 3'- -CCGcCAAUAUUAGUUUg-GACguCGCc -5' |
|||||||
| 21183 | 5' | -47.6 | NC_004778.3 | + | 112410 | 0.66 | 0.999671 |
|
Target: 5'- aGGCGGcacguaGUAAUCAucuucgcucgacgcgGGCC-GCAGCGu -3' miRNA: 3'- -CCGCCaa----UAUUAGU---------------UUGGaCGUCGCc -5' |
|||||||
| 21183 | 5' | -47.6 | NC_004778.3 | + | 121241 | 0.71 | 0.971518 |
|
Target: 5'- uGCGGcg--AGUCgGggUCUGCGGCGGg -3' miRNA: 3'- cCGCCaauaUUAG-UuuGGACGUCGCC- -5' |
|||||||
| 21183 | 5' | -47.6 | NC_004778.3 | + | 121384 | 0.7 | 0.989017 |
|
Target: 5'- cGCGuUUAUGAUC-AGCCcGCGGCGa -3' miRNA: 3'- cCGCcAAUAUUAGuUUGGaCGUCGCc -5' |
|||||||
| 21183 | 5' | -47.6 | NC_004778.3 | + | 124349 | 0.69 | 0.990412 |
|
Target: 5'- aGGCGGcgaccgcgAAgacCGGACCgGCGGCGGc -3' miRNA: 3'- -CCGCCaaua----UUa--GUUUGGaCGUCGCC- -5' |
|||||||
| 21183 | 5' | -47.6 | NC_004778.3 | + | 126978 | 0.68 | 0.996719 |
|
Target: 5'- aGCGG--GUGGUCGAuaACCaGCGGCGu -3' miRNA: 3'- cCGCCaaUAUUAGUU--UGGaCGUCGCc -5' |
|||||||
| 21183 | 5' | -47.6 | NC_004778.3 | + | 127541 | 1.14 | 0.008351 |
|
Target: 5'- cGGCGGUUAUAAUCAAACCUGCAGCGGc -3' miRNA: 3'- -CCGCCAAUAUUAGUUUGGACGUCGCC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home