miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21184 3' -56.3 NC_004778.3 + 127119 1.1 0.002221
Target:  5'- aUCGUGCCGUCGGCACCGUACGCUUGAa -3'
miRNA:   3'- -AGCACGGCAGCCGUGGCAUGCGAACU- -5'
21184 3' -56.3 NC_004778.3 + 127069 0.67 0.815095
Target:  5'- gCGUGCCGUCGuGCAcgcCCGgcgagugcucGCGUUUGc -3'
miRNA:   3'- aGCACGGCAGC-CGU---GGCa---------UGCGAACu -5'
21184 3' -56.3 NC_004778.3 + 122458 0.7 0.660648
Target:  5'- aCGUG-CGUCGGCGCCGaccuUGCUuuuUGAu -3'
miRNA:   3'- aGCACgGCAGCCGUGGCau--GCGA---ACU- -5'
21184 3' -56.3 NC_004778.3 + 121441 0.72 0.568717
Target:  5'- gUCGccGCCGUCGGCGCC--GCGCa--- -3'
miRNA:   3'- -AGCa-CGGCAGCCGUGGcaUGCGaacu -5'
21184 3' -56.3 NC_004778.3 + 112814 0.66 0.892509
Target:  5'- gUUGUGCuCGuUUGGCACCGgaaGCUcGGg -3'
miRNA:   3'- -AGCACG-GC-AGCCGUGGCaugCGAaCU- -5'
21184 3' -56.3 NC_004778.3 + 109686 0.71 0.589012
Target:  5'- cUCGUGCCcgaaaagcgagGUCGGCGCUG-ACGCa--- -3'
miRNA:   3'- -AGCACGG-----------CAGCCGUGGCaUGCGaacu -5'
21184 3' -56.3 NC_004778.3 + 109466 0.7 0.68103
Target:  5'- aCGUGCCcgaaaagcgagGUCGGCGCUG-ACGCa--- -3'
miRNA:   3'- aGCACGG-----------CAGCCGUGGCaUGCGaacu -5'
21184 3' -56.3 NC_004778.3 + 107450 0.67 0.832146
Target:  5'- -gGUGCCGUCGGauuUACUGaGCGCg--- -3'
miRNA:   3'- agCACGGCAGCC---GUGGCaUGCGaacu -5'
21184 3' -56.3 NC_004778.3 + 104040 0.68 0.788291
Target:  5'- ---cGCCGUU-GUACgCGUACGCUUGGu -3'
miRNA:   3'- agcaCGGCAGcCGUG-GCAUGCGAACU- -5'
21184 3' -56.3 NC_004778.3 + 99354 0.75 0.382245
Target:  5'- cUCGUGCCcgaaaagcgagGUCGGCGCCG-ACGCa--- -3'
miRNA:   3'- -AGCACGG-----------CAGCCGUGGCaUGCGaacu -5'
21184 3' -56.3 NC_004778.3 + 86807 0.67 0.815095
Target:  5'- cUCGUGCacCGUCGGCGgCGgaACGCa--- -3'
miRNA:   3'- -AGCACG--GCAGCCGUgGCa-UGCGaacu -5'
21184 3' -56.3 NC_004778.3 + 86313 0.76 0.342307
Target:  5'- gCGcGCCG-CGGCGCCGUcgaaGCGCUUGc -3'
miRNA:   3'- aGCaCGGCaGCCGUGGCA----UGCGAACu -5'
21184 3' -56.3 NC_004778.3 + 77915 0.66 0.885715
Target:  5'- gCGUGCacaucCGUCGGCAgCCuaACGCUgauUGAu -3'
miRNA:   3'- aGCACG-----GCAGCCGU-GGcaUGCGA---ACU- -5'
21184 3' -56.3 NC_004778.3 + 70601 0.68 0.788291
Target:  5'- uUCGauccGCCGUUGGUGCCG-ACGCa--- -3'
miRNA:   3'- -AGCa---CGGCAGCCGUGGCaUGCGaacu -5'
21184 3' -56.3 NC_004778.3 + 66813 0.72 0.5486
Target:  5'- aCGUG-CGUCGGCGCCGaccuCGCUUu- -3'
miRNA:   3'- aGCACgGCAGCCGUGGCau--GCGAAcu -5'
21184 3' -56.3 NC_004778.3 + 66684 0.72 0.5486
Target:  5'- aCGUG-CGUCGGCGCCGaccuCGCUUu- -3'
miRNA:   3'- aGCACgGCAGCCGUGGCau--GCGAAcu -5'
21184 3' -56.3 NC_004778.3 + 66487 0.68 0.806316
Target:  5'- aCGUG-CGUCGGCGCCGaucCGUUUu- -3'
miRNA:   3'- aGCACgGCAGCCGUGGCau-GCGAAcu -5'
21184 3' -56.3 NC_004778.3 + 64770 0.67 0.840401
Target:  5'- cCGUGCacaCGGCGCCGauggccaaUAUGCUUGu -3'
miRNA:   3'- aGCACGgcaGCCGUGGC--------AUGCGAACu -5'
21184 3' -56.3 NC_004778.3 + 64671 0.67 0.848466
Target:  5'- aUUG-GCCaUCGGCGCCGUGUGCa--- -3'
miRNA:   3'- -AGCaCGGcAGCCGUGGCAUGCGaacu -5'
21184 3' -56.3 NC_004778.3 + 62877 0.71 0.589012
Target:  5'- cUCGUGCCcgaaaagcgagGUCGGCGCUG-ACGCa--- -3'
miRNA:   3'- -AGCACGG-----------CAGCCGUGGCaUGCGaacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.