miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21184 3' -56.3 NC_004778.3 + 64770 0.67 0.840401
Target:  5'- cCGUGCacaCGGCGCCGauggccaaUAUGCUUGu -3'
miRNA:   3'- aGCACGgcaGCCGUGGC--------AUGCGAACu -5'
21184 3' -56.3 NC_004778.3 + 104040 0.68 0.788291
Target:  5'- ---cGCCGUU-GUACgCGUACGCUUGGu -3'
miRNA:   3'- agcaCGGCAGcCGUG-GCAUGCGAACU- -5'
21184 3' -56.3 NC_004778.3 + 6386 0.68 0.800971
Target:  5'- aUGUcGCCGUCguaaaacgcguugcuGGCccGCCGUACGCUUu- -3'
miRNA:   3'- aGCA-CGGCAG---------------CCG--UGGCAUGCGAAcu -5'
21184 3' -56.3 NC_004778.3 + 66487 0.68 0.806316
Target:  5'- aCGUG-CGUCGGCGCCGaucCGUUUu- -3'
miRNA:   3'- aGCACgGCAGCCGUGGCau-GCGAAcu -5'
21184 3' -56.3 NC_004778.3 + 36466 0.67 0.815095
Target:  5'- -gGUGUgGUgGGCGCCaccacGCGCUUGGc -3'
miRNA:   3'- agCACGgCAgCCGUGGca---UGCGAACU- -5'
21184 3' -56.3 NC_004778.3 + 127069 0.67 0.815095
Target:  5'- gCGUGCCGUCGuGCAcgcCCGgcgagugcucGCGUUUGc -3'
miRNA:   3'- aGCACGGCAGC-CGU---GGCa---------UGCGAACu -5'
21184 3' -56.3 NC_004778.3 + 50869 0.67 0.823708
Target:  5'- --aUGCUGUUGGC--CGUGCGCUUGc -3'
miRNA:   3'- agcACGGCAGCCGugGCAUGCGAACu -5'
21184 3' -56.3 NC_004778.3 + 61361 0.67 0.823708
Target:  5'- aUGUGCgGaCGGCGCCG-GCGCg--- -3'
miRNA:   3'- aGCACGgCaGCCGUGGCaUGCGaacu -5'
21184 3' -56.3 NC_004778.3 + 107450 0.67 0.832146
Target:  5'- -gGUGCCGUCGGauuUACUGaGCGCg--- -3'
miRNA:   3'- agCACGGCAGCC---GUGGCaUGCGaacu -5'
21184 3' -56.3 NC_004778.3 + 70601 0.68 0.788291
Target:  5'- uUCGauccGCCGUUGGUGCCG-ACGCa--- -3'
miRNA:   3'- -AGCa---CGGCAGCCGUGGCaUGCGaacu -5'
21184 3' -56.3 NC_004778.3 + 21136 0.68 0.788291
Target:  5'- aCGUGCCGcucugCGGCGUCGggaGCGCcgUGAu -3'
miRNA:   3'- aGCACGGCa----GCCGUGGCa--UGCGa-ACU- -5'
21184 3' -56.3 NC_004778.3 + 19875 0.69 0.701251
Target:  5'- aCGUG-CGUCGGCGCCGaccuCGCa--- -3'
miRNA:   3'- aGCACgGCAGCCGUGGCau--GCGaacu -5'
21184 3' -56.3 NC_004778.3 + 19909 0.72 0.5486
Target:  5'- aCGUG-CGUCGGCGCCGaccuCGCUUu- -3'
miRNA:   3'- aGCACgGCAGCCGUGGCau--GCGAAcu -5'
21184 3' -56.3 NC_004778.3 + 20030 0.72 0.5486
Target:  5'- aCGUG-CGUCGGCGCCGaccuCGCUUu- -3'
miRNA:   3'- aGCACgGCAGCCGUGGCau--GCGAAcu -5'
21184 3' -56.3 NC_004778.3 + 66684 0.72 0.5486
Target:  5'- aCGUG-CGUCGGCGCCGaccuCGCUUu- -3'
miRNA:   3'- aGCACgGCAGCCGUGGCau--GCGAAcu -5'
21184 3' -56.3 NC_004778.3 + 66813 0.72 0.5486
Target:  5'- aCGUG-CGUCGGCGCCGaccuCGCUUu- -3'
miRNA:   3'- aGCACgGCAGCCGUGGCau--GCGAAcu -5'
21184 3' -56.3 NC_004778.3 + 121441 0.72 0.568717
Target:  5'- gUCGccGCCGUCGGCGCC--GCGCa--- -3'
miRNA:   3'- -AGCa-CGGCAGCCGUGGcaUGCGaacu -5'
21184 3' -56.3 NC_004778.3 + 122458 0.7 0.660648
Target:  5'- aCGUG-CGUCGGCGCCGaccuUGCUuuuUGAu -3'
miRNA:   3'- aGCACgGCAGCCGUGGCau--GCGA---ACU- -5'
21184 3' -56.3 NC_004778.3 + 7615 0.7 0.660648
Target:  5'- aUCGacuUGUCGUCGGCACCGUcaAUGUa--- -3'
miRNA:   3'- -AGC---ACGGCAGCCGUGGCA--UGCGaacu -5'
21184 3' -56.3 NC_004778.3 + 8739 0.7 0.660648
Target:  5'- ---cGCCGcCGGCGCCGUgGCGCg--- -3'
miRNA:   3'- agcaCGGCaGCCGUGGCA-UGCGaacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.