Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21184 | 3' | -56.3 | NC_004778.3 | + | 112814 | 0.66 | 0.892509 |
Target: 5'- gUUGUGCuCGuUUGGCACCGgaaGCUcGGg -3' miRNA: 3'- -AGCACG-GC-AGCCGUGGCaugCGAaCU- -5' |
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21184 | 3' | -56.3 | NC_004778.3 | + | 109686 | 0.71 | 0.589012 |
Target: 5'- cUCGUGCCcgaaaagcgagGUCGGCGCUG-ACGCa--- -3' miRNA: 3'- -AGCACGG-----------CAGCCGUGGCaUGCGaacu -5' |
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21184 | 3' | -56.3 | NC_004778.3 | + | 49021 | 0.67 | 0.815095 |
Target: 5'- -gGUGCgGcUGGCGCCGUAC-UUUGAc -3' miRNA: 3'- agCACGgCaGCCGUGGCAUGcGAACU- -5' |
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21184 | 3' | -56.3 | NC_004778.3 | + | 62693 | 0.67 | 0.815095 |
Target: 5'- -aGUGagGUCGGCGCCG-ACGCa--- -3' miRNA: 3'- agCACggCAGCCGUGGCaUGCGaacu -5' |
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21184 | 3' | -56.3 | NC_004778.3 | + | 59221 | 0.67 | 0.848466 |
Target: 5'- cCGUGCUGUcCGGCGCUuggGCGCc--- -3' miRNA: 3'- aGCACGGCA-GCCGUGGca-UGCGaacu -5' |
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21184 | 3' | -56.3 | NC_004778.3 | + | 64671 | 0.67 | 0.848466 |
Target: 5'- aUUG-GCCaUCGGCGCCGUGUGCa--- -3' miRNA: 3'- -AGCaCGGcAGCCGUGGCAUGCGaacu -5' |
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21184 | 3' | -56.3 | NC_004778.3 | + | 30075 | 0.72 | 0.5486 |
Target: 5'- aCGUG-CGUCGGCGCCGaccuCGCUUu- -3' miRNA: 3'- aGCACgGCAGCCGUGGCau--GCGAAcu -5' |
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21184 | 3' | -56.3 | NC_004778.3 | + | 109466 | 0.7 | 0.68103 |
Target: 5'- aCGUGCCcgaaaagcgagGUCGGCGCUG-ACGCa--- -3' miRNA: 3'- aGCACGG-----------CAGCCGUGGCaUGCGaacu -5' |
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21184 | 3' | -56.3 | NC_004778.3 | + | 86807 | 0.67 | 0.815095 |
Target: 5'- cUCGUGCacCGUCGGCGgCGgaACGCa--- -3' miRNA: 3'- -AGCACG--GCAGCCGUgGCa-UGCGaacu -5' |
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21184 | 3' | -56.3 | NC_004778.3 | + | 51565 | 0.66 | 0.856335 |
Target: 5'- cCGUGUCGUUG--ACCGUACGgaUGGu -3' miRNA: 3'- aGCACGGCAGCcgUGGCAUGCgaACU- -5' |
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21184 | 3' | -56.3 | NC_004778.3 | + | 5137 | 0.66 | 0.892509 |
Target: 5'- cCGUGCCcacGcCGGCGCC--GCGCUUc- -3' miRNA: 3'- aGCACGG---CaGCCGUGGcaUGCGAAcu -5' |
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21184 | 3' | -56.3 | NC_004778.3 | + | 86313 | 0.76 | 0.342307 |
Target: 5'- gCGcGCCG-CGGCGCCGUcgaaGCGCUUGc -3' miRNA: 3'- aGCaCGGCaGCCGUGGCA----UGCGAACu -5' |
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21184 | 3' | -56.3 | NC_004778.3 | + | 32547 | 0.66 | 0.864 |
Target: 5'- cCGcGaCGaCGGCGCCGUACGCg--- -3' miRNA: 3'- aGCaCgGCaGCCGUGGCAUGCGaacu -5' |
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21184 | 3' | -56.3 | NC_004778.3 | + | 11622 | 0.69 | 0.701251 |
Target: 5'- cUCGuUGUCGUCGucgcugguGCGCCGcuUGCGCUUGu -3' miRNA: 3'- -AGC-ACGGCAGC--------CGUGGC--AUGCGAACu -5' |
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21184 | 3' | -56.3 | NC_004778.3 | + | 127119 | 1.1 | 0.002221 |
Target: 5'- aUCGUGCCGUCGGCACCGUACGCUUGAa -3' miRNA: 3'- -AGCACGGCAGCCGUGGCAUGCGAACU- -5' |
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21184 | 3' | -56.3 | NC_004778.3 | + | 62877 | 0.71 | 0.589012 |
Target: 5'- cUCGUGCCcgaaaagcgagGUCGGCGCUG-ACGCa--- -3' miRNA: 3'- -AGCACGG-----------CAGCCGUGGCaUGCGaacu -5' |
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21184 | 3' | -56.3 | NC_004778.3 | + | 66487 | 0.68 | 0.806316 |
Target: 5'- aCGUG-CGUCGGCGCCGaucCGUUUu- -3' miRNA: 3'- aGCACgGCAGCCGUGGCau-GCGAAcu -5' |
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21184 | 3' | -56.3 | NC_004778.3 | + | 6386 | 0.68 | 0.800971 |
Target: 5'- aUGUcGCCGUCguaaaacgcguugcuGGCccGCCGUACGCUUu- -3' miRNA: 3'- aGCA-CGGCAG---------------CCG--UGGCAUGCGAAcu -5' |
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21184 | 3' | -56.3 | NC_004778.3 | + | 104040 | 0.68 | 0.788291 |
Target: 5'- ---cGCCGUU-GUACgCGUACGCUUGGu -3' miRNA: 3'- agcaCGGCAGcCGUG-GCAUGCGAACU- -5' |
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21184 | 3' | -56.3 | NC_004778.3 | + | 70601 | 0.68 | 0.788291 |
Target: 5'- uUCGauccGCCGUUGGUGCCG-ACGCa--- -3' miRNA: 3'- -AGCa---CGGCAGCCGUGGCaUGCGaacu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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