miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21184 5' -55.9 NC_004778.3 + 94533 0.66 0.86026
Target:  5'- uGGCCAUGCGcUugcgguauaacgccGCUGCCGAGGucgacguGCGCa- -3'
miRNA:   3'- -CUGGUACGU-A--------------CGACGGUUCU-------CGCGca -5'
21184 5' -55.9 NC_004778.3 + 80560 0.66 0.821732
Target:  5'- uGCCGauacgcGCGUGCcGCCAAGGccguGCGCGa -3'
miRNA:   3'- cUGGUa-----CGUACGaCGGUUCU----CGCGCa -5'
21184 5' -55.9 NC_004778.3 + 101435 0.67 0.803722
Target:  5'- cGCCAUGCGuUGCU-CgCAGGuGCGCGc -3'
miRNA:   3'- cUGGUACGU-ACGAcG-GUUCuCGCGCa -5'
21184 5' -55.9 NC_004778.3 + 117358 0.67 0.794464
Target:  5'- aGCC--GCAUaGCUGCUAAGgcgGGCGCGg -3'
miRNA:   3'- cUGGuaCGUA-CGACGGUUC---UCGCGCa -5'
21184 5' -55.9 NC_004778.3 + 30719 0.67 0.785051
Target:  5'- uGugUGUGCAU-CUGCCGGagaaggagcacGAGCGCGa -3'
miRNA:   3'- -CugGUACGUAcGACGGUU-----------CUCGCGCa -5'
21184 5' -55.9 NC_004778.3 + 30728 0.67 0.785051
Target:  5'- cGGCCGcgGCcgGCUGCCAucgaaAGuuCGCGUc -3'
miRNA:   3'- -CUGGUa-CGuaCGACGGU-----UCucGCGCA- -5'
21184 5' -55.9 NC_004778.3 + 83845 0.67 0.765794
Target:  5'- cGGCUAUGCAgaagGCgcGCCAggcgcuggaGGAGCGCu- -3'
miRNA:   3'- -CUGGUACGUa---CGa-CGGU---------UCUCGCGca -5'
21184 5' -55.9 NC_004778.3 + 98831 0.68 0.75597
Target:  5'- -----aGCAUGCccaaUGCCAcGGAGCGCGg -3'
miRNA:   3'- cugguaCGUACG----ACGGU-UCUCGCGCa -5'
21184 5' -55.9 NC_004778.3 + 53666 0.71 0.537802
Target:  5'- aGGCCGUGUuugcgcacAUGCuUGCCGccagcgccgaGGAGCGCGa -3'
miRNA:   3'- -CUGGUACG--------UACG-ACGGU----------UCUCGCGCa -5'
21184 5' -55.9 NC_004778.3 + 99305 0.71 0.537802
Target:  5'- cGGCCAUgGCuuuuGUGCUGUCAcugAGuGCGCGUg -3'
miRNA:   3'- -CUGGUA-CG----UACGACGGU---UCuCGCGCA- -5'
21184 5' -55.9 NC_004778.3 + 62207 0.73 0.430354
Target:  5'- cGGCCucuUGCAUGUUGUCAGGcagcguuGCGCGUu -3'
miRNA:   3'- -CUGGu--ACGUACGACGGUUCu------CGCGCA- -5'
21184 5' -55.9 NC_004778.3 + 127153 1.07 0.002617
Target:  5'- cGACCAUGCAUGCUGCCAAGAGCGCGUc -3'
miRNA:   3'- -CUGGUACGUACGACGGUUCUCGCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.