Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21185 | 5' | -56 | NC_004778.3 | + | 45920 | 0.67 | 0.834991 |
Target: 5'- gCCaUGuUCCGCCGGCGAACugGa--GCu -3' miRNA: 3'- -GG-AC-GGGCGGCCGCUUGugUaagUGc -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 46111 | 0.67 | 0.858948 |
Target: 5'- gCUGUCCGUCuGCuugGAACGCGUUUGCu -3' miRNA: 3'- gGACGGGCGGcCG---CUUGUGUAAGUGc -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 47717 | 0.69 | 0.744386 |
Target: 5'- gCCUGCugaaaacgaugCCGCUGGCGcaagccuuguGGCGCAUaCACGc -3' miRNA: 3'- -GGACG-----------GGCGGCCGC----------UUGUGUAaGUGC- -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 49433 | 0.69 | 0.773011 |
Target: 5'- aUUGCgCCGCCGacgcagccucuuGCGAggGCACGUUUAUGg -3' miRNA: 3'- gGACG-GGCGGC------------CGCU--UGUGUAAGUGC- -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 52233 | 0.67 | 0.8325 |
Target: 5'- gCUGCgCG-CGGCGAaaACGCAUauacguacccucaaUCACGg -3' miRNA: 3'- gGACGgGCgGCCGCU--UGUGUA--------------AGUGC- -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 53144 | 0.68 | 0.800503 |
Target: 5'- --cGCuuGCCaaauGCGAGC-CGUUCACGg -3' miRNA: 3'- ggaCGggCGGc---CGCUUGuGUAAGUGC- -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 60052 | 0.72 | 0.592856 |
Target: 5'- --aGCCCGCCgaggaaccGGCGGACGag-UCGCGg -3' miRNA: 3'- ggaCGGGCGG--------CCGCUUGUguaAGUGC- -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 60150 | 0.66 | 0.901188 |
Target: 5'- -gUGCUgGCCGGCGAAUcgugGUUCAUu -3' miRNA: 3'- ggACGGgCGGCCGCUUGug--UAAGUGc -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 61900 | 0.67 | 0.858948 |
Target: 5'- cUCUGCguuaaaugaaCgGCCGGCGAAUuaaugGCGUUgGCGg -3' miRNA: 3'- -GGACG----------GgCGGCCGCUUG-----UGUAAgUGC- -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 62122 | 0.7 | 0.674584 |
Target: 5'- -gUGCcgCCGCCGGCGAACAgGUccUCAa- -3' miRNA: 3'- ggACG--GGCGGCCGCUUGUgUA--AGUgc -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 64844 | 0.75 | 0.419887 |
Target: 5'- aCUUGCCCGUCGGCGcacugcgccACACAUgcUCACc -3' miRNA: 3'- -GGACGGGCGGCCGCu--------UGUGUA--AGUGc -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 67322 | 0.72 | 0.572561 |
Target: 5'- aCCUGUUCGCCGGCGGcgGCACcuacuaccaUUACGu -3' miRNA: 3'- -GGACGGGCGGCCGCU--UGUGua-------AGUGC- -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 72235 | 0.66 | 0.881062 |
Target: 5'- --aGCuCCGUCGGCaAGCACcaAUUCGCa -3' miRNA: 3'- ggaCG-GGCGGCCGcUUGUG--UAAGUGc -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 76020 | 0.68 | 0.782313 |
Target: 5'- -aUGCUCGCCGuuGAACACGagcgUCACc -3' miRNA: 3'- ggACGGGCGGCcgCUUGUGUa---AGUGc -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 76931 | 0.67 | 0.84317 |
Target: 5'- --gGCCgGCCGGCuGGCGCAauUUUACu -3' miRNA: 3'- ggaCGGgCGGCCGcUUGUGU--AAGUGc -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 79285 | 0.7 | 0.684731 |
Target: 5'- -gUGCCCGgcaaCGGCGAuCGCAUUC-CGu -3' miRNA: 3'- ggACGGGCg---GCCGCUuGUGUAAGuGC- -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 83522 | 0.7 | 0.674584 |
Target: 5'- uCCaGUUCGCCGGCGgAACAUGgcucgUCGCGc -3' miRNA: 3'- -GGaCGGGCGGCCGC-UUGUGUa----AGUGC- -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 86034 | 0.72 | 0.582691 |
Target: 5'- gCUGUCCGCCGGCucGCACGccugcCGCa -3' miRNA: 3'- gGACGGGCGGCCGcuUGUGUaa---GUGc -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 90776 | 0.68 | 0.800503 |
Target: 5'- uUCUGUuuGCCGGCGGuCACgGUUUAgGc -3' miRNA: 3'- -GGACGggCGGCCGCUuGUG-UAAGUgC- -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 91174 | 0.66 | 0.887998 |
Target: 5'- aCCU--CCGUCgGGCGcuCGCGUUCACGc -3' miRNA: 3'- -GGAcgGGCGG-CCGCuuGUGUAAGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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