Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21185 | 5' | -56 | NC_004778.3 | + | 4046 | 0.67 | 0.858948 |
Target: 5'- -gUGUUCGCCGGCGGGCAgGccgaGCGc -3' miRNA: 3'- ggACGGGCGGCCGCUUGUgUaag-UGC- -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 5136 | 0.66 | 0.881062 |
Target: 5'- gCCgUGCCCacGCCGGCGccGCGC-UUCAg- -3' miRNA: 3'- -GG-ACGGG--CGGCCGCu-UGUGuAAGUgc -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 7908 | 0.66 | 0.894708 |
Target: 5'- gUUGCUgGCCGGCG-GCGCuuaccUCACc -3' miRNA: 3'- gGACGGgCGGCCGCuUGUGua---AGUGc -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 9479 | 0.66 | 0.873906 |
Target: 5'- cUCUGCCUGCgCGuCGucACACAggUUCACGu -3' miRNA: 3'- -GGACGGGCG-GCcGCu-UGUGU--AAGUGC- -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 9560 | 0.67 | 0.866532 |
Target: 5'- --cGCCgCGCCGGCcGAAaaaGCcguuaaGUUCACGg -3' miRNA: 3'- ggaCGG-GCGGCCG-CUUg--UG------UAAGUGC- -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 18041 | 0.67 | 0.858948 |
Target: 5'- cCCgGCCCucaaacguauGCUGGUGAGCACc-UCGCa -3' miRNA: 3'- -GGaCGGG----------CGGCCGCUUGUGuaAGUGc -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 21189 | 0.72 | 0.582691 |
Target: 5'- -gUGCUCGCCGGCGGACguGCAgccgUUGCu -3' miRNA: 3'- ggACGGGCGGCCGCUUG--UGUa---AGUGc -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 27193 | 0.72 | 0.572561 |
Target: 5'- aCCUGUCC-CCGGCGGuucaGCAaaaGUUCGCu -3' miRNA: 3'- -GGACGGGcGGCCGCU----UGUg--UAAGUGc -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 27790 | 0.68 | 0.782313 |
Target: 5'- aCCUGCCCGCgCuGCac-CGCAUgCACGg -3' miRNA: 3'- -GGACGGGCG-GcCGcuuGUGUAaGUGC- -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 31241 | 0.67 | 0.84317 |
Target: 5'- gCUGUCCG-UGGCGcGCGCAccUCGCGc -3' miRNA: 3'- gGACGGGCgGCCGCuUGUGUa-AGUGC- -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 32261 | 0.66 | 0.903715 |
Target: 5'- uCCUGCCaaccgcgcacgcugGCCGGCG-GCGCcgUguCGg -3' miRNA: 3'- -GGACGGg-------------CGGCCGCuUGUGuaAguGC- -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 34433 | 0.82 | 0.176734 |
Target: 5'- aCCUGCCCGUCGGCGcacGGCGCg--CGCGg -3' miRNA: 3'- -GGACGGGCGGCCGC---UUGUGuaaGUGC- -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 35137 | 0.66 | 0.894708 |
Target: 5'- gCUG-CUGCCGGCcGACGCAaauugCGCGu -3' miRNA: 3'- gGACgGGCGGCCGcUUGUGUaa---GUGC- -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 35760 | 0.67 | 0.858948 |
Target: 5'- --cGCCCgaGCUGGCGGACAacuugGUUgGCGg -3' miRNA: 3'- ggaCGGG--CGGCCGCUUGUg----UAAgUGC- -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 36721 | 0.72 | 0.582691 |
Target: 5'- --cGCaCCGCCGGCGccauauuaauaAACGCAcguUUCGCGg -3' miRNA: 3'- ggaCG-GGCGGCCGC-----------UUGUGU---AAGUGC- -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 38885 | 0.68 | 0.79148 |
Target: 5'- --cGCUCGgCGGCGAGCGCugcCACu -3' miRNA: 3'- ggaCGGGCgGCCGCUUGUGuaaGUGc -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 40509 | 0.67 | 0.866532 |
Target: 5'- uCUUGCggcgcuucgaCGCCGGCGcguCGCAUUCAUu -3' miRNA: 3'- -GGACGg---------GCGGCCGCuu-GUGUAAGUGc -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 41238 | 0.66 | 0.887998 |
Target: 5'- --gGCCgCGCCGGCaaccccauuaucGAAguCAUUCGCa -3' miRNA: 3'- ggaCGG-GCGGCCG------------CUUguGUAAGUGc -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 44008 | 0.67 | 0.834991 |
Target: 5'- cCCUGCUgCGUgGGCGAcgucauACGCGUggGCGa -3' miRNA: 3'- -GGACGG-GCGgCCGCU------UGUGUAagUGC- -5' |
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21185 | 5' | -56 | NC_004778.3 | + | 44317 | 0.67 | 0.866532 |
Target: 5'- -aUGCCCGCCaGCGAcgaGCGgcgcCGCGa -3' miRNA: 3'- ggACGGGCGGcCGCUug-UGUaa--GUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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