miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21185 5' -56 NC_004778.3 + 125400 1.1 0.002327
Target:  5'- gCCUGCCCGCCGGCGAACACAUUCACGu -3'
miRNA:   3'- -GGACGGGCGGCCGCUUGUGUAAGUGC- -5'
21185 5' -56 NC_004778.3 + 34433 0.82 0.176734
Target:  5'- aCCUGCCCGUCGGCGcacGGCGCg--CGCGg -3'
miRNA:   3'- -GGACGGGCGGCCGC---UUGUGuaaGUGC- -5'
21185 5' -56 NC_004778.3 + 64844 0.75 0.419887
Target:  5'- aCUUGCCCGUCGGCGcacugcgccACACAUgcUCACc -3'
miRNA:   3'- -GGACGGGCGGCCGCu--------UGUGUA--AGUGc -5'
21185 5' -56 NC_004778.3 + 93128 0.75 0.419887
Target:  5'- --cGCCgCGCUGGCGAucACGCAguugUCGCGa -3'
miRNA:   3'- ggaCGG-GCGGCCGCU--UGUGUa---AGUGC- -5'
21185 5' -56 NC_004778.3 + 108260 0.75 0.428733
Target:  5'- --cGUCCGCCGGCGAGCAC-UUUAa- -3'
miRNA:   3'- ggaCGGGCGGCCGCUUGUGuAAGUgc -5'
21185 5' -56 NC_004778.3 + 108197 0.73 0.512881
Target:  5'- aCCUGCCgCGCggacugcaCGGCuuuCACGUUCACGa -3'
miRNA:   3'- -GGACGG-GCG--------GCCGcuuGUGUAAGUGC- -5'
21185 5' -56 NC_004778.3 + 27193 0.72 0.572561
Target:  5'- aCCUGUCC-CCGGCGGuucaGCAaaaGUUCGCu -3'
miRNA:   3'- -GGACGGGcGGCCGCU----UGUg--UAAGUGc -5'
21185 5' -56 NC_004778.3 + 67322 0.72 0.572561
Target:  5'- aCCUGUUCGCCGGCGGcgGCACcuacuaccaUUACGu -3'
miRNA:   3'- -GGACGGGCGGCCGCU--UGUGua-------AGUGC- -5'
21185 5' -56 NC_004778.3 + 86034 0.72 0.582691
Target:  5'- gCUGUCCGCCGGCucGCACGccugcCGCa -3'
miRNA:   3'- gGACGGGCGGCCGcuUGUGUaa---GUGc -5'
21185 5' -56 NC_004778.3 + 36721 0.72 0.582691
Target:  5'- --cGCaCCGCCGGCGccauauuaauaAACGCAcguUUCGCGg -3'
miRNA:   3'- ggaCG-GGCGGCCGC-----------UUGUGU---AAGUGC- -5'
21185 5' -56 NC_004778.3 + 21189 0.72 0.582691
Target:  5'- -gUGCUCGCCGGCGGACguGCAgccgUUGCu -3'
miRNA:   3'- ggACGGGCGGCCGCUUG--UGUa---AGUGc -5'
21185 5' -56 NC_004778.3 + 60052 0.72 0.592856
Target:  5'- --aGCCCGCCgaggaaccGGCGGACGag-UCGCGg -3'
miRNA:   3'- ggaCGGGCGG--------CCGCUUGUguaAGUGC- -5'
21185 5' -56 NC_004778.3 + 105916 0.71 0.643967
Target:  5'- aCUUGCgCGCCGGCGAuucgauACGCGUUaaagucuccCACa -3'
miRNA:   3'- -GGACGgGCGGCCGCU------UGUGUAA---------GUGc -5'
21185 5' -56 NC_004778.3 + 83522 0.7 0.674584
Target:  5'- uCCaGUUCGCCGGCGgAACAUGgcucgUCGCGc -3'
miRNA:   3'- -GGaCGGGCGGCCGC-UUGUGUa----AGUGC- -5'
21185 5' -56 NC_004778.3 + 62122 0.7 0.674584
Target:  5'- -gUGCcgCCGCCGGCGAACAgGUccUCAa- -3'
miRNA:   3'- ggACG--GGCGGCCGCUUGUgUA--AGUgc -5'
21185 5' -56 NC_004778.3 + 79285 0.7 0.684731
Target:  5'- -gUGCCCGgcaaCGGCGAuCGCAUUC-CGu -3'
miRNA:   3'- ggACGGGCg---GCCGCUuGUGUAAGuGC- -5'
21185 5' -56 NC_004778.3 + 95287 0.69 0.734635
Target:  5'- gCUUGUcgCCGCCGGCGAcCGCGUcgucgUACGc -3'
miRNA:   3'- -GGACG--GGCGGCCGCUuGUGUAa----GUGC- -5'
21185 5' -56 NC_004778.3 + 47717 0.69 0.744386
Target:  5'- gCCUGCugaaaacgaugCCGCUGGCGcaagccuuguGGCGCAUaCACGc -3'
miRNA:   3'- -GGACG-----------GGCGGCCGC----------UUGUGUAaGUGC- -5'
21185 5' -56 NC_004778.3 + 49433 0.69 0.773011
Target:  5'- aUUGCgCCGCCGacgcagccucuuGCGAggGCACGUUUAUGg -3'
miRNA:   3'- gGACG-GGCGGC------------CGCU--UGUGUAAGUGC- -5'
21185 5' -56 NC_004778.3 + 96862 0.69 0.773011
Target:  5'- gCCUGaCCGCCGuG-GAGCACGUUaCGCc -3'
miRNA:   3'- -GGACgGGCGGC-CgCUUGUGUAA-GUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.