miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21185 5' -56 NC_004778.3 + 35760 0.67 0.858948
Target:  5'- --cGCCCgaGCUGGCGGACAacuugGUUgGCGg -3'
miRNA:   3'- ggaCGGG--CGGCCGCUUGUg----UAAgUGC- -5'
21185 5' -56 NC_004778.3 + 115063 0.68 0.79148
Target:  5'- gCCUGCCCGUCGaUGAGgGCugcugUCACc -3'
miRNA:   3'- -GGACGGGCGGCcGCUUgUGua---AGUGc -5'
21185 5' -56 NC_004778.3 + 90776 0.68 0.800503
Target:  5'- uUCUGUuuGCCGGCGGuCACgGUUUAgGc -3'
miRNA:   3'- -GGACGggCGGCCGCUuGUG-UAAGUgC- -5'
21185 5' -56 NC_004778.3 + 52233 0.67 0.8325
Target:  5'- gCUGCgCG-CGGCGAaaACGCAUauacguacccucaaUCACGg -3'
miRNA:   3'- gGACGgGCgGCCGCU--UGUGUA--------------AGUGC- -5'
21185 5' -56 NC_004778.3 + 31241 0.67 0.84317
Target:  5'- gCUGUCCG-UGGCGcGCGCAccUCGCGc -3'
miRNA:   3'- gGACGGGCgGCCGCuUGUGUa-AGUGC- -5'
21185 5' -56 NC_004778.3 + 95259 0.67 0.84317
Target:  5'- -gUGCgCCG-CGGCGAccGCACcgUCGCu -3'
miRNA:   3'- ggACG-GGCgGCCGCU--UGUGuaAGUGc -5'
21185 5' -56 NC_004778.3 + 46111 0.67 0.858948
Target:  5'- gCUGUCCGUCuGCuugGAACGCGUUUGCu -3'
miRNA:   3'- gGACGGGCGGcCG---CUUGUGUAAGUGc -5'
21185 5' -56 NC_004778.3 + 61900 0.67 0.858948
Target:  5'- cUCUGCguuaaaugaaCgGCCGGCGAAUuaaugGCGUUgGCGg -3'
miRNA:   3'- -GGACG----------GgCGGCCGCUUG-----UGUAAgUGC- -5'
21185 5' -56 NC_004778.3 + 4046 0.67 0.858948
Target:  5'- -gUGUUCGCCGGCGGGCAgGccgaGCGc -3'
miRNA:   3'- ggACGGGCGGCCGCUUGUgUaag-UGC- -5'
21185 5' -56 NC_004778.3 + 76020 0.68 0.782313
Target:  5'- -aUGCUCGCCGuuGAACACGagcgUCACc -3'
miRNA:   3'- ggACGGGCGGCcgCUUGUGUa---AGUGc -5'
21185 5' -56 NC_004778.3 + 27790 0.68 0.782313
Target:  5'- aCCUGCCCGCgCuGCac-CGCAUgCACGg -3'
miRNA:   3'- -GGACGGGCG-GcCGcuuGUGUAaGUGC- -5'
21185 5' -56 NC_004778.3 + 118787 0.68 0.782313
Target:  5'- --gGCgCgGCCGGCGcGCACAaUUACGa -3'
miRNA:   3'- ggaCG-GgCGGCCGCuUGUGUaAGUGC- -5'
21185 5' -56 NC_004778.3 + 27193 0.72 0.572561
Target:  5'- aCCUGUCC-CCGGCGGuucaGCAaaaGUUCGCu -3'
miRNA:   3'- -GGACGGGcGGCCGCU----UGUg--UAAGUGc -5'
21185 5' -56 NC_004778.3 + 21189 0.72 0.582691
Target:  5'- -gUGCUCGCCGGCGGACguGCAgccgUUGCu -3'
miRNA:   3'- ggACGGGCGGCCGCUUG--UGUa---AGUGc -5'
21185 5' -56 NC_004778.3 + 36721 0.72 0.582691
Target:  5'- --cGCaCCGCCGGCGccauauuaauaAACGCAcguUUCGCGg -3'
miRNA:   3'- ggaCG-GGCGGCCGC-----------UUGUGU---AAGUGC- -5'
21185 5' -56 NC_004778.3 + 60052 0.72 0.592856
Target:  5'- --aGCCCGCCgaggaaccGGCGGACGag-UCGCGg -3'
miRNA:   3'- ggaCGGGCGG--------CCGCUUGUguaAGUGC- -5'
21185 5' -56 NC_004778.3 + 62122 0.7 0.674584
Target:  5'- -gUGCcgCCGCCGGCGAACAgGUccUCAa- -3'
miRNA:   3'- ggACG--GGCGGCCGCUUGUgUA--AGUgc -5'
21185 5' -56 NC_004778.3 + 83522 0.7 0.674584
Target:  5'- uCCaGUUCGCCGGCGgAACAUGgcucgUCGCGc -3'
miRNA:   3'- -GGaCGGGCGGCCGC-UUGUGUa----AGUGC- -5'
21185 5' -56 NC_004778.3 + 47717 0.69 0.744386
Target:  5'- gCCUGCugaaaacgaugCCGCUGGCGcaagccuuguGGCGCAUaCACGc -3'
miRNA:   3'- -GGACG-----------GGCGGCCGC----------UUGUGUAaGUGC- -5'
21185 5' -56 NC_004778.3 + 49433 0.69 0.773011
Target:  5'- aUUGCgCCGCCGacgcagccucuuGCGAggGCACGUUUAUGg -3'
miRNA:   3'- gGACG-GGCGGC------------CGCU--UGUGUAAGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.