miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21185 5' -56 NC_004778.3 + 109466 0.66 0.907435
Target:  5'- aCgUGCCCgaaaagcgagGUCGGCGcuGACGCAcgUCACu -3'
miRNA:   3'- -GgACGGG----------CGGCCGC--UUGUGUa-AGUGc -5'
21185 5' -56 NC_004778.3 + 79285 0.7 0.684731
Target:  5'- -gUGCCCGgcaaCGGCGAuCGCAUUC-CGu -3'
miRNA:   3'- ggACGGGCg---GCCGCUuGUGUAAGuGC- -5'
21185 5' -56 NC_004778.3 + 86034 0.72 0.582691
Target:  5'- gCUGUCCGCCGGCucGCACGccugcCGCa -3'
miRNA:   3'- gGACGGGCGGCCGcuUGUGUaa---GUGc -5'
21185 5' -56 NC_004778.3 + 125400 1.1 0.002327
Target:  5'- gCCUGCCCGCCGGCGAACACAUUCACGu -3'
miRNA:   3'- -GGACGGGCGGCCGCUUGUGUAAGUGC- -5'
21185 5' -56 NC_004778.3 + 72235 0.66 0.881062
Target:  5'- --aGCuCCGUCGGCaAGCACcaAUUCGCa -3'
miRNA:   3'- ggaCG-GGCGGCCGcUUGUG--UAAGUGc -5'
21185 5' -56 NC_004778.3 + 5136 0.66 0.881062
Target:  5'- gCCgUGCCCacGCCGGCGccGCGC-UUCAg- -3'
miRNA:   3'- -GG-ACGGG--CGGCCGCu-UGUGuAAGUgc -5'
21185 5' -56 NC_004778.3 + 93438 0.67 0.866532
Target:  5'- gUUGCCCGCCGuGCGGugccaucccaACGaGUUgACGg -3'
miRNA:   3'- gGACGGGCGGC-CGCU----------UGUgUAAgUGC- -5'
21185 5' -56 NC_004778.3 + 18041 0.67 0.858948
Target:  5'- cCCgGCCCucaaacguauGCUGGUGAGCACc-UCGCa -3'
miRNA:   3'- -GGaCGGG----------CGGCCGCUUGUGuaAGUGc -5'
21185 5' -56 NC_004778.3 + 44008 0.67 0.834991
Target:  5'- cCCUGCUgCGUgGGCGAcgucauACGCGUggGCGa -3'
miRNA:   3'- -GGACGG-GCGgCCGCU------UGUGUAagUGC- -5'
21185 5' -56 NC_004778.3 + 95287 0.69 0.734635
Target:  5'- gCUUGUcgCCGCCGGCGAcCGCGUcgucgUACGc -3'
miRNA:   3'- -GGACG--GGCGGCCGCUuGUGUAa----GUGC- -5'
21185 5' -56 NC_004778.3 + 53144 0.68 0.800503
Target:  5'- --cGCuuGCCaaauGCGAGC-CGUUCACGg -3'
miRNA:   3'- ggaCGggCGGc---CGCUUGuGUAAGUGC- -5'
21185 5' -56 NC_004778.3 + 76931 0.67 0.84317
Target:  5'- --gGCCgGCCGGCuGGCGCAauUUUACu -3'
miRNA:   3'- ggaCGGgCGGCCGcUUGUGU--AAGUGc -5'
21185 5' -56 NC_004778.3 + 113144 0.66 0.901188
Target:  5'- gCCgacGCCUGCCGGC----ACGUUUACa -3'
miRNA:   3'- -GGa--CGGGCGGCCGcuugUGUAAGUGc -5'
21185 5' -56 NC_004778.3 + 38885 0.68 0.79148
Target:  5'- --cGCUCGgCGGCGAGCGCugcCACu -3'
miRNA:   3'- ggaCGGGCgGCCGCUUGUGuaaGUGc -5'
21185 5' -56 NC_004778.3 + 7908 0.66 0.894708
Target:  5'- gUUGCUgGCCGGCG-GCGCuuaccUCACc -3'
miRNA:   3'- gGACGGgCGGCCGCuUGUGua---AGUGc -5'
21185 5' -56 NC_004778.3 + 116156 0.67 0.851159
Target:  5'- aCCUGCCCguguuggaugcGCUGGCGAGgGa--UUACGa -3'
miRNA:   3'- -GGACGGG-----------CGGCCGCUUgUguaAGUGC- -5'
21185 5' -56 NC_004778.3 + 96862 0.69 0.773011
Target:  5'- gCCUGaCCGCCGuG-GAGCACGUUaCGCc -3'
miRNA:   3'- -GGACgGGCGGC-CgCUUGUGUAA-GUGc -5'
21185 5' -56 NC_004778.3 + 105916 0.71 0.643967
Target:  5'- aCUUGCgCGCCGGCGAuucgauACGCGUUaaagucuccCACa -3'
miRNA:   3'- -GGACGgGCGGCCGCU------UGUGUAA---------GUGc -5'
21185 5' -56 NC_004778.3 + 41238 0.66 0.887998
Target:  5'- --gGCCgCGCCGGCaaccccauuaucGAAguCAUUCGCa -3'
miRNA:   3'- ggaCGG-GCGGCCG------------CUUguGUAAGUGc -5'
21185 5' -56 NC_004778.3 + 9479 0.66 0.873906
Target:  5'- cUCUGCCUGCgCGuCGucACACAggUUCACGu -3'
miRNA:   3'- -GGACGGGCG-GCcGCu-UGUGU--AAGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.