miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21185 5' -56 NC_004778.3 + 109466 0.66 0.907435
Target:  5'- aCgUGCCCgaaaagcgagGUCGGCGcuGACGCAcgUCACu -3'
miRNA:   3'- -GgACGGG----------CGGCCGC--UUGUGUa-AGUGc -5'
21185 5' -56 NC_004778.3 + 32261 0.66 0.903715
Target:  5'- uCCUGCCaaccgcgcacgcugGCCGGCG-GCGCcgUguCGg -3'
miRNA:   3'- -GGACGGg-------------CGGCCGCuUGUGuaAguGC- -5'
21185 5' -56 NC_004778.3 + 113144 0.66 0.901188
Target:  5'- gCCgacGCCUGCCGGC----ACGUUUACa -3'
miRNA:   3'- -GGa--CGGGCGGCCGcuugUGUAAGUGc -5'
21185 5' -56 NC_004778.3 + 114931 0.66 0.901188
Target:  5'- --cGCaaGCCGGCGuGCGCAc-CGCGg -3'
miRNA:   3'- ggaCGggCGGCCGCuUGUGUaaGUGC- -5'
21185 5' -56 NC_004778.3 + 60150 0.66 0.901188
Target:  5'- -gUGCUgGCCGGCGAAUcgugGUUCAUu -3'
miRNA:   3'- ggACGGgCGGCCGCUUGug--UAAGUGc -5'
21185 5' -56 NC_004778.3 + 35137 0.66 0.894708
Target:  5'- gCUG-CUGCCGGCcGACGCAaauugCGCGu -3'
miRNA:   3'- gGACgGGCGGCCGcUUGUGUaa---GUGC- -5'
21185 5' -56 NC_004778.3 + 94834 0.66 0.894708
Target:  5'- aCUGCaacgUGCCGGUGGguuGCGCGccgCACGg -3'
miRNA:   3'- gGACGg---GCGGCCGCU---UGUGUaa-GUGC- -5'
21185 5' -56 NC_004778.3 + 7908 0.66 0.894708
Target:  5'- gUUGCUgGCCGGCG-GCGCuuaccUCACc -3'
miRNA:   3'- gGACGGgCGGCCGCuUGUGua---AGUGc -5'
21185 5' -56 NC_004778.3 + 91174 0.66 0.887998
Target:  5'- aCCU--CCGUCgGGCGcuCGCGUUCACGc -3'
miRNA:   3'- -GGAcgGGCGG-CCGCuuGUGUAAGUGC- -5'
21185 5' -56 NC_004778.3 + 41238 0.66 0.887998
Target:  5'- --gGCCgCGCCGGCaaccccauuaucGAAguCAUUCGCa -3'
miRNA:   3'- ggaCGG-GCGGCCG------------CUUguGUAAGUGc -5'
21185 5' -56 NC_004778.3 + 5136 0.66 0.881062
Target:  5'- gCCgUGCCCacGCCGGCGccGCGC-UUCAg- -3'
miRNA:   3'- -GG-ACGGG--CGGCCGCu-UGUGuAAGUgc -5'
21185 5' -56 NC_004778.3 + 72235 0.66 0.881062
Target:  5'- --aGCuCCGUCGGCaAGCACcaAUUCGCa -3'
miRNA:   3'- ggaCG-GGCGGCCGcUUGUG--UAAGUGc -5'
21185 5' -56 NC_004778.3 + 96596 0.66 0.873906
Target:  5'- cCCUGCUagccaGCgCGGCGGcCGCuagCGCGa -3'
miRNA:   3'- -GGACGGg----CG-GCCGCUuGUGuaaGUGC- -5'
21185 5' -56 NC_004778.3 + 9479 0.66 0.873906
Target:  5'- cUCUGCCUGCgCGuCGucACACAggUUCACGu -3'
miRNA:   3'- -GGACGGGCG-GCcGCu-UGUGU--AAGUGC- -5'
21185 5' -56 NC_004778.3 + 93438 0.67 0.866532
Target:  5'- gUUGCCCGCCGuGCGGugccaucccaACGaGUUgACGg -3'
miRNA:   3'- gGACGGGCGGC-CGCU----------UGUgUAAgUGC- -5'
21185 5' -56 NC_004778.3 + 40509 0.67 0.866532
Target:  5'- uCUUGCggcgcuucgaCGCCGGCGcguCGCAUUCAUu -3'
miRNA:   3'- -GGACGg---------GCGGCCGCuu-GUGUAAGUGc -5'
21185 5' -56 NC_004778.3 + 44317 0.67 0.866532
Target:  5'- -aUGCCCGCCaGCGAcgaGCGgcgcCGCGa -3'
miRNA:   3'- ggACGGGCGGcCGCUug-UGUaa--GUGC- -5'
21185 5' -56 NC_004778.3 + 9560 0.67 0.866532
Target:  5'- --cGCCgCGCCGGCcGAAaaaGCcguuaaGUUCACGg -3'
miRNA:   3'- ggaCGG-GCGGCCG-CUUg--UG------UAAGUGC- -5'
21185 5' -56 NC_004778.3 + 4046 0.67 0.858948
Target:  5'- -gUGUUCGCCGGCGGGCAgGccgaGCGc -3'
miRNA:   3'- ggACGGGCGGCCGCUUGUgUaag-UGC- -5'
21185 5' -56 NC_004778.3 + 35760 0.67 0.858948
Target:  5'- --cGCCCgaGCUGGCGGACAacuugGUUgGCGg -3'
miRNA:   3'- ggaCGGG--CGGCCGCUUGUg----UAAgUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.