miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21185 5' -56 NC_004778.3 + 125400 1.1 0.002327
Target:  5'- gCCUGCCCGCCGGCGAACACAUUCACGu -3'
miRNA:   3'- -GGACGGGCGGCCGCUUGUGUAAGUGC- -5'
21185 5' -56 NC_004778.3 + 118787 0.68 0.782313
Target:  5'- --gGCgCgGCCGGCGcGCACAaUUACGa -3'
miRNA:   3'- ggaCG-GgCGGCCGCuUGUGUaAGUGC- -5'
21185 5' -56 NC_004778.3 + 116156 0.67 0.851159
Target:  5'- aCCUGCCCguguuggaugcGCUGGCGAGgGa--UUACGa -3'
miRNA:   3'- -GGACGGG-----------CGGCCGCUUgUguaAGUGC- -5'
21185 5' -56 NC_004778.3 + 115063 0.68 0.79148
Target:  5'- gCCUGCCCGUCGaUGAGgGCugcugUCACc -3'
miRNA:   3'- -GGACGGGCGGCcGCUUgUGua---AGUGc -5'
21185 5' -56 NC_004778.3 + 114931 0.66 0.901188
Target:  5'- --cGCaaGCCGGCGuGCGCAc-CGCGg -3'
miRNA:   3'- ggaCGggCGGCCGCuUGUGUaaGUGC- -5'
21185 5' -56 NC_004778.3 + 113144 0.66 0.901188
Target:  5'- gCCgacGCCUGCCGGC----ACGUUUACa -3'
miRNA:   3'- -GGa--CGGGCGGCCGcuugUGUAAGUGc -5'
21185 5' -56 NC_004778.3 + 109466 0.66 0.907435
Target:  5'- aCgUGCCCgaaaagcgagGUCGGCGcuGACGCAcgUCACu -3'
miRNA:   3'- -GgACGGG----------CGGCCGC--UUGUGUa-AGUGc -5'
21185 5' -56 NC_004778.3 + 108260 0.75 0.428733
Target:  5'- --cGUCCGCCGGCGAGCAC-UUUAa- -3'
miRNA:   3'- ggaCGGGCGGCCGCUUGUGuAAGUgc -5'
21185 5' -56 NC_004778.3 + 108197 0.73 0.512881
Target:  5'- aCCUGCCgCGCggacugcaCGGCuuuCACGUUCACGa -3'
miRNA:   3'- -GGACGG-GCG--------GCCGcuuGUGUAAGUGC- -5'
21185 5' -56 NC_004778.3 + 105916 0.71 0.643967
Target:  5'- aCUUGCgCGCCGGCGAuucgauACGCGUUaaagucuccCACa -3'
miRNA:   3'- -GGACGgGCGGCCGCU------UGUGUAA---------GUGc -5'
21185 5' -56 NC_004778.3 + 96862 0.69 0.773011
Target:  5'- gCCUGaCCGCCGuG-GAGCACGUUaCGCc -3'
miRNA:   3'- -GGACgGGCGGC-CgCUUGUGUAA-GUGc -5'
21185 5' -56 NC_004778.3 + 96596 0.66 0.873906
Target:  5'- cCCUGCUagccaGCgCGGCGGcCGCuagCGCGa -3'
miRNA:   3'- -GGACGGg----CG-GCCGCUuGUGuaaGUGC- -5'
21185 5' -56 NC_004778.3 + 95287 0.69 0.734635
Target:  5'- gCUUGUcgCCGCCGGCGAcCGCGUcgucgUACGc -3'
miRNA:   3'- -GGACG--GGCGGCCGCUuGUGUAa----GUGC- -5'
21185 5' -56 NC_004778.3 + 95259 0.67 0.84317
Target:  5'- -gUGCgCCG-CGGCGAccGCACcgUCGCu -3'
miRNA:   3'- ggACG-GGCgGCCGCU--UGUGuaAGUGc -5'
21185 5' -56 NC_004778.3 + 94834 0.66 0.894708
Target:  5'- aCUGCaacgUGCCGGUGGguuGCGCGccgCACGg -3'
miRNA:   3'- gGACGg---GCGGCCGCU---UGUGUaa-GUGC- -5'
21185 5' -56 NC_004778.3 + 93438 0.67 0.866532
Target:  5'- gUUGCCCGCCGuGCGGugccaucccaACGaGUUgACGg -3'
miRNA:   3'- gGACGGGCGGC-CGCU----------UGUgUAAgUGC- -5'
21185 5' -56 NC_004778.3 + 93128 0.75 0.419887
Target:  5'- --cGCCgCGCUGGCGAucACGCAguugUCGCGa -3'
miRNA:   3'- ggaCGG-GCGGCCGCU--UGUGUa---AGUGC- -5'
21185 5' -56 NC_004778.3 + 91174 0.66 0.887998
Target:  5'- aCCU--CCGUCgGGCGcuCGCGUUCACGc -3'
miRNA:   3'- -GGAcgGGCGG-CCGCuuGUGUAAGUGC- -5'
21185 5' -56 NC_004778.3 + 90776 0.68 0.800503
Target:  5'- uUCUGUuuGCCGGCGGuCACgGUUUAgGc -3'
miRNA:   3'- -GGACGggCGGCCGCUuGUG-UAAGUgC- -5'
21185 5' -56 NC_004778.3 + 86034 0.72 0.582691
Target:  5'- gCUGUCCGCCGGCucGCACGccugcCGCa -3'
miRNA:   3'- gGACGGGCGGCCGcuUGUGUaa---GUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.