miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21188 3' -54.9 NC_004778.3 + 61577 0.69 0.817479
Target:  5'- gCGGCGGU---CUUGUagucguacGCGcUGGCGCUa -3'
miRNA:   3'- -GCCGCCAauuGAACA--------CGCuGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 32945 0.69 0.812221
Target:  5'- gGGCGGacgacaccgccgcgUGGC-UGUGCGGCcGCGUCg -3'
miRNA:   3'- gCCGCCa-------------AUUGaACACGCUGcCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 92735 0.69 0.808682
Target:  5'- cCGGCGGUgcgcguCUUG-GCGagcGCGGUGUUg -3'
miRNA:   3'- -GCCGCCAauu---GAACaCGC---UGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 49002 0.69 0.790609
Target:  5'- uGGCacauucGUUGcGCgcgGUGCGGCuGGCGCCg -3'
miRNA:   3'- gCCGc-----CAAU-UGaa-CACGCUG-CCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 17095 0.69 0.78135
Target:  5'- aGGCcGUguuGC-UGUGCGcGCGGCGCg -3'
miRNA:   3'- gCCGcCAau-UGaACACGC-UGCCGCGg -5'
21188 3' -54.9 NC_004778.3 + 17232 0.7 0.762432
Target:  5'- cCGcGCGGcc-GCUaUGcGCGAgGGCGCCg -3'
miRNA:   3'- -GC-CGCCaauUGA-ACaCGCUgCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 28235 0.7 0.762432
Target:  5'- uGGCGGgagAACaacaaGCccgGACGGCGCCa -3'
miRNA:   3'- gCCGCCaa-UUGaaca-CG---CUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 43992 0.7 0.752793
Target:  5'- aGGCGGUgauUGGCgacccUGcUGCGugGGCGaCg -3'
miRNA:   3'- gCCGCCA---AUUGa----AC-ACGCugCCGCgG- -5'
21188 3' -54.9 NC_004778.3 + 67802 0.7 0.752793
Target:  5'- gCGGC-GUUGGCgcgcgcugGcUGCG-CGGCGCCa -3'
miRNA:   3'- -GCCGcCAAUUGaa------C-ACGCuGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 8809 0.7 0.733198
Target:  5'- gCGGCGGgcgcGCUca-GCGaAUGGCGCCu -3'
miRNA:   3'- -GCCGCCaau-UGAacaCGC-UGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 114007 0.71 0.713246
Target:  5'- aGGCGGcgcuGCgagcaGUGCuuugauaucGGCGGCGCCa -3'
miRNA:   3'- gCCGCCaau-UGaa---CACG---------CUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 35785 0.71 0.703161
Target:  5'- uGGCGGUcuGCgaauggUGUGUGuuuCGGCuGCCc -3'
miRNA:   3'- gCCGCCAauUGa-----ACACGCu--GCCG-CGG- -5'
21188 3' -54.9 NC_004778.3 + 36461 0.71 0.693014
Target:  5'- aCGGCGGU------GUG-GugGGCGCCa -3'
miRNA:   3'- -GCCGCCAauugaaCACgCugCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 43110 0.71 0.6736
Target:  5'- cCGGCGGcu-GCUgcgcaagcgcuuCGACGGCGCCg -3'
miRNA:   3'- -GCCGCCaauUGAacac--------GCUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 81799 0.72 0.666413
Target:  5'- gGGCGGcgucuguaaccagAACUccUGCGGCGGCGUCu -3'
miRNA:   3'- gCCGCCaa-----------UUGAacACGCUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 60983 0.72 0.662299
Target:  5'- cCGGCGGc-GGCggcgGCGGCGGCGgCg -3'
miRNA:   3'- -GCCGCCaaUUGaacaCGCUGCCGCgG- -5'
21188 3' -54.9 NC_004778.3 + 52581 0.72 0.628264
Target:  5'- aGGCGGUcgaaAGCcUGUuugaaauuaaaaugGCGaACGGCGCCa -3'
miRNA:   3'- gCCGCCAa---UUGaACA--------------CGC-UGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 76344 0.75 0.499868
Target:  5'- gCGGCGGUU-GCUgcgGCGGCGGuUGCUg -3'
miRNA:   3'- -GCCGCCAAuUGAacaCGCUGCC-GCGG- -5'
21188 3' -54.9 NC_004778.3 + 76374 0.75 0.499868
Target:  5'- gCGGCGGUU-GCUgcgGCGGCGGuUGCUg -3'
miRNA:   3'- -GCCGCCAAuUGAacaCGCUGCC-GCGG- -5'
21188 3' -54.9 NC_004778.3 + 76404 0.75 0.499868
Target:  5'- gCGGCGGUU-GCUgugGCGGCGGuUGCUg -3'
miRNA:   3'- -GCCGCCAAuUGAacaCGCUGCC-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.