miRNA display CGI


Results 21 - 40 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21188 3' -54.9 NC_004778.3 + 40864 0.67 0.894805
Target:  5'- gGcGCGGUUAA--UGUGCuuuuCGGCGUCc -3'
miRNA:   3'- gC-CGCCAAUUgaACACGcu--GCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 25863 0.67 0.888041
Target:  5'- gCGGCGauaaUUAGggUGUGUGcCGGCGCg -3'
miRNA:   3'- -GCCGCc---AAUUgaACACGCuGCCGCGg -5'
21188 3' -54.9 NC_004778.3 + 77581 0.67 0.873828
Target:  5'- uGGUGGUUAucgUGUuuGUGGUGGCGCUg -3'
miRNA:   3'- gCCGCCAAUugaACA--CGCUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 120943 0.67 0.873093
Target:  5'- gGGCGGUaauacgaUGACUg--GCGG-GGCGCg -3'
miRNA:   3'- gCCGCCA-------AUUGAacaCGCUgCCGCGg -5'
21188 3' -54.9 NC_004778.3 + 27835 0.68 0.858735
Target:  5'- gGGCGGUcaaUGACgaugacagaGUGUGGCGuGCGUa -3'
miRNA:   3'- gCCGCCA---AUUGaa-------CACGCUGC-CGCGg -5'
21188 3' -54.9 NC_004778.3 + 7902 0.68 0.858735
Target:  5'- gGGCGuGUU-GCUg--GcCGGCGGCGCUu -3'
miRNA:   3'- gCCGC-CAAuUGAacaC-GCUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 19882 0.68 0.858735
Target:  5'- uCGGCGccgaccucgcaGUgcuauCUUacGUGCGuCGGCGCCg -3'
miRNA:   3'- -GCCGC-----------CAauu--GAA--CACGCuGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 81753 0.68 0.858735
Target:  5'- gCGGCGGgUGGCggac-CGACuGCGCCg -3'
miRNA:   3'- -GCCGCCaAUUGaacacGCUGcCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 110179 0.68 0.850873
Target:  5'- aGGCGcacgcGCUUucGCaGACGGCGCCa -3'
miRNA:   3'- gCCGCcaau-UGAAcaCG-CUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 71322 0.68 0.850873
Target:  5'- uCGGCGcGuUUAACUcGUggggcucgaggcGCGGCGGCGgCa -3'
miRNA:   3'- -GCCGC-C-AAUUGAaCA------------CGCUGCCGCgG- -5'
21188 3' -54.9 NC_004778.3 + 104356 0.68 0.850873
Target:  5'- cCGGCGuacgUGACUcgGU-CGGCGcGCGCCu -3'
miRNA:   3'- -GCCGCca--AUUGAa-CAcGCUGC-CGCGG- -5'
21188 3' -54.9 NC_004778.3 + 110803 0.68 0.842809
Target:  5'- gGGCGGUaGGCg---GCGcGCGGCGUUu -3'
miRNA:   3'- gCCGCCAaUUGaacaCGC-UGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 71365 0.68 0.842809
Target:  5'- uCGGCGGga-GCguagGCGAgGGUGUCg -3'
miRNA:   3'- -GCCGCCaauUGaacaCGCUgCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 9013 0.68 0.842809
Target:  5'- gCGGCGGgcugcAUUUGUcGCa--GGCGCCg -3'
miRNA:   3'- -GCCGCCaau--UGAACA-CGcugCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 71317 0.68 0.842809
Target:  5'- uCGGCGGgg-GCguagGCGAgGGUGUCg -3'
miRNA:   3'- -GCCGCCaauUGaacaCGCUgCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 71413 0.68 0.842809
Target:  5'- uCGGCGGgg-GCguagGCGAgGGUGUCg -3'
miRNA:   3'- -GCCGCCaauUGaacaCGCUgCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 71461 0.68 0.842809
Target:  5'- uCGGCGGgg-GCguagGCGAgGGUGUCg -3'
miRNA:   3'- -GCCGCCaauUGaacaCGCUgCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 34906 0.68 0.837877
Target:  5'- gCGGC-GUUAuaccgcaagcgcaugGCaUUGUGCGcgGCGGCGUCg -3'
miRNA:   3'- -GCCGcCAAU---------------UG-AACACGC--UGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 30062 0.68 0.83455
Target:  5'- ---aGGUUAuCUUuagacGUGCGuCGGCGCCg -3'
miRNA:   3'- gccgCCAAUuGAA-----CACGCuGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 61577 0.69 0.817479
Target:  5'- gCGGCGGU---CUUGUagucguacGCGcUGGCGCUa -3'
miRNA:   3'- -GCCGCCAauuGAACA--------CGCuGCCGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.