miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21188 3' -54.9 NC_004778.3 + 36461 0.71 0.693014
Target:  5'- aCGGCGGU------GUG-GugGGCGCCa -3'
miRNA:   3'- -GCCGCCAauugaaCACgCugCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 40864 0.67 0.894805
Target:  5'- gGcGCGGUUAA--UGUGCuuuuCGGCGUCc -3'
miRNA:   3'- gC-CGCCAAUUgaACACGcu--GCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 43110 0.71 0.6736
Target:  5'- cCGGCGGcu-GCUgcgcaagcgcuuCGACGGCGCCg -3'
miRNA:   3'- -GCCGCCaauUGAacac--------GCUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 43992 0.7 0.752793
Target:  5'- aGGCGGUgauUGGCgacccUGcUGCGugGGCGaCg -3'
miRNA:   3'- gCCGCCA---AUUGa----AC-ACGCugCCGCgG- -5'
21188 3' -54.9 NC_004778.3 + 44102 0.66 0.935479
Target:  5'- gCGGCGGcgAugUcaUGgacgcgggcguuUGCGGCGGCGaCg -3'
miRNA:   3'- -GCCGCCaaUugA--AC------------ACGCUGCCGCgG- -5'
21188 3' -54.9 NC_004778.3 + 49002 0.69 0.790609
Target:  5'- uGGCacauucGUUGcGCgcgGUGCGGCuGGCGCCg -3'
miRNA:   3'- gCCGc-----CAAU-UGaa-CACGCUG-CCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 52581 0.72 0.628264
Target:  5'- aGGCGGUcgaaAGCcUGUuugaaauuaaaaugGCGaACGGCGCCa -3'
miRNA:   3'- gCCGCCAa---UUGaACA--------------CGC-UGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 56982 0.77 0.373599
Target:  5'- aCGGCGcugGACcUGUGCGGCGG-GCCa -3'
miRNA:   3'- -GCCGCcaaUUGaACACGCUGCCgCGG- -5'
21188 3' -54.9 NC_004778.3 + 60983 0.72 0.662299
Target:  5'- cCGGCGGc-GGCggcgGCGGCGGCGgCg -3'
miRNA:   3'- -GCCGCCaaUUGaacaCGCUGCCGCgG- -5'
21188 3' -54.9 NC_004778.3 + 61007 0.66 0.935479
Target:  5'- nCGGCGGc-GGCg---GCGGUGGCGCUu -3'
miRNA:   3'- -GCCGCCaaUUGaacaCGCUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 61037 0.67 0.898752
Target:  5'- uGGCGGUcggUAGCcaaaucaaacacGUGCucgaaucGCGGCGCCg -3'
miRNA:   3'- gCCGCCA---AUUGaa----------CACGc------UGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 61346 0.75 0.471089
Target:  5'- -cGCaGGUUcGGCUucaUGUGCgGACGGCGCCg -3'
miRNA:   3'- gcCG-CCAA-UUGA---ACACG-CUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 61577 0.69 0.817479
Target:  5'- gCGGCGGU---CUUGUagucguacGCGcUGGCGCUa -3'
miRNA:   3'- -GCCGCCAauuGAACA--------CGCuGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 63495 0.83 0.164855
Target:  5'- gGGCGGauucgGGCUcaUGcUGCGGCGGCGCCa -3'
miRNA:   3'- gCCGCCaa---UUGA--AC-ACGCUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 64778 0.66 0.931946
Target:  5'- aCGGCGccgauggccaauauGCUUGUucggGCGACGcGCGCUg -3'
miRNA:   3'- -GCCGCcaau----------UGAACA----CGCUGC-CGCGG- -5'
21188 3' -54.9 NC_004778.3 + 67802 0.7 0.752793
Target:  5'- gCGGC-GUUGGCgcgcgcugGcUGCG-CGGCGCCa -3'
miRNA:   3'- -GCCGcCAAUUGaa------C-ACGCuGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 71257 0.66 0.919497
Target:  5'- uCGGCGaaggcGUUGGCgagggUGUcgGCGAgGGUGUCg -3'
miRNA:   3'- -GCCGC-----CAAUUGa----ACA--CGCUgCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 71317 0.68 0.842809
Target:  5'- uCGGCGGgg-GCguagGCGAgGGUGUCg -3'
miRNA:   3'- -GCCGCCaauUGaacaCGCUgCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 71322 0.68 0.850873
Target:  5'- uCGGCGcGuUUAACUcGUggggcucgaggcGCGGCGGCGgCa -3'
miRNA:   3'- -GCCGC-C-AAUUGAaCA------------CGCUGCCGCgG- -5'
21188 3' -54.9 NC_004778.3 + 71365 0.68 0.842809
Target:  5'- uCGGCGGga-GCguagGCGAgGGUGUCg -3'
miRNA:   3'- -GCCGCCaauUGaacaCGCUgCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.