miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21188 3' -54.9 NC_004778.3 + 7902 0.68 0.858735
Target:  5'- gGGCGuGUU-GCUg--GcCGGCGGCGCUu -3'
miRNA:   3'- gCCGC-CAAuUGAacaC-GCUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 7985 0.8 0.251953
Target:  5'- uGGCGGcaguuACUaUGUGCG-CGGCGCCg -3'
miRNA:   3'- gCCGCCaau--UGA-ACACGCuGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 8809 0.7 0.733198
Target:  5'- gCGGCGGgcgcGCUca-GCGaAUGGCGCCu -3'
miRNA:   3'- -GCCGCCaau-UGAacaCGC-UGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 9013 0.68 0.842809
Target:  5'- gCGGCGGgcugcAUUUGUcGCa--GGCGCCg -3'
miRNA:   3'- -GCCGCCaau--UGAACA-CGcugCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 9889 0.66 0.913684
Target:  5'- uGGUGGcUuuCUUGUaGCGcUGGCGCa -3'
miRNA:   3'- gCCGCCaAuuGAACA-CGCuGCCGCGg -5'
21188 3' -54.9 NC_004778.3 + 17095 0.69 0.78135
Target:  5'- aGGCcGUguuGC-UGUGCGcGCGGCGCg -3'
miRNA:   3'- gCCGcCAau-UGaACACGC-UGCCGCGg -5'
21188 3' -54.9 NC_004778.3 + 17232 0.7 0.762432
Target:  5'- cCGcGCGGcc-GCUaUGcGCGAgGGCGCCg -3'
miRNA:   3'- -GC-CGCCaauUGA-ACaCGCUgCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 19882 0.68 0.858735
Target:  5'- uCGGCGccgaccucgcaGUgcuauCUUacGUGCGuCGGCGCCg -3'
miRNA:   3'- -GCCGC-----------CAauu--GAA--CACGCuGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 24207 0.81 0.242357
Target:  5'- aCGuGCaGGUaguuuuuguuguuucUAguaaGCUUGUGCGACGGCGCCg -3'
miRNA:   3'- -GC-CG-CCA---------------AU----UGAACACGCUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 25120 0.67 0.905767
Target:  5'- gGGCaGUUGAUUUGUugcuucacguucuuGCGGCGcGUGCa -3'
miRNA:   3'- gCCGcCAAUUGAACA--------------CGCUGC-CGCGg -5'
21188 3' -54.9 NC_004778.3 + 25863 0.67 0.888041
Target:  5'- gCGGCGauaaUUAGggUGUGUGcCGGCGCg -3'
miRNA:   3'- -GCCGCc---AAUUgaACACGCuGCCGCGg -5'
21188 3' -54.9 NC_004778.3 + 27835 0.68 0.858735
Target:  5'- gGGCGGUcaaUGACgaugacagaGUGUGGCGuGCGUa -3'
miRNA:   3'- gCCGCCA---AUUGaa-------CACGCUGC-CGCGg -5'
21188 3' -54.9 NC_004778.3 + 27886 0.69 0.817479
Target:  5'- gCGGCGGcgag--UGUGUGGCGGCcaGCg -3'
miRNA:   3'- -GCCGCCaauugaACACGCUGCCG--CGg -5'
21188 3' -54.9 NC_004778.3 + 28235 0.7 0.762432
Target:  5'- uGGCGGgagAACaacaaGCccgGACGGCGCCa -3'
miRNA:   3'- gCCGCCaa-UUGaaca-CG---CUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 30062 0.68 0.83455
Target:  5'- ---aGGUUAuCUUuagacGUGCGuCGGCGCCg -3'
miRNA:   3'- gccgCCAAUuGAA-----CACGCuGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 32945 0.69 0.812221
Target:  5'- gGGCGGacgacaccgccgcgUGGC-UGUGCGGCcGCGUCg -3'
miRNA:   3'- gCCGCCa-------------AUUGaACACGCUGcCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 34292 0.66 0.930395
Target:  5'- uCGGCGGUcGugUgGUGgaacaaacggccCGACGuGCGUCg -3'
miRNA:   3'- -GCCGCCAaUugAaCAC------------GCUGC-CGCGG- -5'
21188 3' -54.9 NC_004778.3 + 34906 0.68 0.837877
Target:  5'- gCGGC-GUUAuaccgcaagcgcaugGCaUUGUGCGcgGCGGCGUCg -3'
miRNA:   3'- -GCCGcCAAU---------------UG-AACACGC--UGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 35785 0.71 0.703161
Target:  5'- uGGCGGUcuGCgaauggUGUGUGuuuCGGCuGCCc -3'
miRNA:   3'- gCCGCCAauUGa-----ACACGCu--GCCG-CGG- -5'
21188 3' -54.9 NC_004778.3 + 36203 0.67 0.90763
Target:  5'- aGGCaGaucGCg---GCGAUGGCGCCg -3'
miRNA:   3'- gCCGcCaauUGaacaCGCUGCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.