miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21188 3' -54.9 NC_004778.3 + 27835 0.68 0.858735
Target:  5'- gGGCGGUcaaUGACgaugacagaGUGUGGCGuGCGUa -3'
miRNA:   3'- gCCGCCA---AUUGaa-------CACGCUGC-CGCGg -5'
21188 3' -54.9 NC_004778.3 + 34906 0.68 0.837877
Target:  5'- gCGGC-GUUAuaccgcaagcgcaugGCaUUGUGCGcgGCGGCGUCg -3'
miRNA:   3'- -GCCGcCAAU---------------UG-AACACGC--UGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 9013 0.68 0.842809
Target:  5'- gCGGCGGgcugcAUUUGUcGCa--GGCGCCg -3'
miRNA:   3'- -GCCGCCaau--UGAACA-CGcugCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 71317 0.68 0.842809
Target:  5'- uCGGCGGgg-GCguagGCGAgGGUGUCg -3'
miRNA:   3'- -GCCGCCaauUGaacaCGCUgCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 71365 0.68 0.842809
Target:  5'- uCGGCGGga-GCguagGCGAgGGUGUCg -3'
miRNA:   3'- -GCCGCCaauUGaacaCGCUgCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 71413 0.68 0.842809
Target:  5'- uCGGCGGgg-GCguagGCGAgGGUGUCg -3'
miRNA:   3'- -GCCGCCaauUGaacaCGCUgCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 71461 0.68 0.842809
Target:  5'- uCGGCGGgg-GCguagGCGAgGGUGUCg -3'
miRNA:   3'- -GCCGCCaauUGaacaCGCUgCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 104356 0.68 0.850873
Target:  5'- cCGGCGuacgUGACUcgGU-CGGCGcGCGCCu -3'
miRNA:   3'- -GCCGCca--AUUGAa-CAcGCUGC-CGCGG- -5'
21188 3' -54.9 NC_004778.3 + 110179 0.68 0.850873
Target:  5'- aGGCGcacgcGCUUucGCaGACGGCGCCa -3'
miRNA:   3'- gCCGCcaau-UGAAcaCG-CUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 61577 0.69 0.817479
Target:  5'- gCGGCGGU---CUUGUagucguacGCGcUGGCGCUa -3'
miRNA:   3'- -GCCGCCAauuGAACA--------CGCuGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 27886 0.69 0.817479
Target:  5'- gCGGCGGcgag--UGUGUGGCGGCcaGCg -3'
miRNA:   3'- -GCCGCCaauugaACACGCUGCCG--CGg -5'
21188 3' -54.9 NC_004778.3 + 32945 0.69 0.812221
Target:  5'- gGGCGGacgacaccgccgcgUGGC-UGUGCGGCcGCGUCg -3'
miRNA:   3'- gCCGCCa-------------AUUGaACACGCUGcCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 56982 0.77 0.373599
Target:  5'- aCGGCGcugGACcUGUGCGGCGG-GCCa -3'
miRNA:   3'- -GCCGCcaaUUGaACACGCUGCCgCGG- -5'
21188 3' -54.9 NC_004778.3 + 61346 0.75 0.471089
Target:  5'- -cGCaGGUUcGGCUucaUGUGCgGACGGCGCCg -3'
miRNA:   3'- gcCG-CCAA-UUGA---ACACG-CUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 81799 0.72 0.666413
Target:  5'- gGGCGGcgucuguaaccagAACUccUGCGGCGGCGUCu -3'
miRNA:   3'- gCCGCCaa-----------UUGAacACGCUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 43110 0.71 0.6736
Target:  5'- cCGGCGGcu-GCUgcgcaagcgcuuCGACGGCGCCg -3'
miRNA:   3'- -GCCGCCaauUGAacac--------GCUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 36461 0.71 0.693014
Target:  5'- aCGGCGGU------GUG-GugGGCGCCa -3'
miRNA:   3'- -GCCGCCAauugaaCACgCugCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 35785 0.71 0.703161
Target:  5'- uGGCGGUcuGCgaauggUGUGUGuuuCGGCuGCCc -3'
miRNA:   3'- gCCGCCAauUGa-----ACACGCu--GCCG-CGG- -5'
21188 3' -54.9 NC_004778.3 + 8809 0.7 0.733198
Target:  5'- gCGGCGGgcgcGCUca-GCGaAUGGCGCCu -3'
miRNA:   3'- -GCCGCCaau-UGAacaCGC-UGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 17095 0.69 0.78135
Target:  5'- aGGCcGUguuGC-UGUGCGcGCGGCGCg -3'
miRNA:   3'- gCCGcCAau-UGaACACGC-UGCCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.