miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21188 3' -54.9 NC_004778.3 + 61007 0.66 0.935479
Target:  5'- nCGGCGGc-GGCg---GCGGUGGCGCUu -3'
miRNA:   3'- -GCCGCCaaUUGaacaCGCUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 49002 0.69 0.790609
Target:  5'- uGGCacauucGUUGcGCgcgGUGCGGCuGGCGCCg -3'
miRNA:   3'- gCCGc-----CAAU-UGaa-CACGCUG-CCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 17232 0.7 0.762432
Target:  5'- cCGcGCGGcc-GCUaUGcGCGAgGGCGCCg -3'
miRNA:   3'- -GC-CGCCaauUGA-ACaCGCUgCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 120404 1.12 0.002196
Target:  5'- gCGGCGGUUAACUUGUGCGACGGCGCCu -3'
miRNA:   3'- -GCCGCCAAUUGAACACGCUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 84118 0.66 0.930395
Target:  5'- cCGGCGGcgAGCgcacacaGCgGACGGCGUUc -3'
miRNA:   3'- -GCCGCCaaUUGaaca---CG-CUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 34292 0.66 0.930395
Target:  5'- uCGGCGGUcGugUgGUGgaacaaacggccCGACGuGCGUCg -3'
miRNA:   3'- -GCCGCCAaUugAaCAC------------GCUGC-CGCGG- -5'
21188 3' -54.9 NC_004778.3 + 9889 0.66 0.913684
Target:  5'- uGGUGGcUuuCUUGUaGCGcUGGCGCa -3'
miRNA:   3'- gCCGCCaAuuGAACA-CGCuGCCGCGg -5'
21188 3' -54.9 NC_004778.3 + 117425 0.66 0.913684
Target:  5'- aGaGCGGcUugUUUGUgauaaGCGGCGGCGCg -3'
miRNA:   3'- gC-CGCCaAuuGAACA-----CGCUGCCGCGg -5'
21188 3' -54.9 NC_004778.3 + 83021 0.67 0.901336
Target:  5'- --aUGGUcAGgUUGUGCGACGcggcacGCGCCa -3'
miRNA:   3'- gccGCCAaUUgAACACGCUGC------CGCGG- -5'
21188 3' -54.9 NC_004778.3 + 92735 0.69 0.808682
Target:  5'- cCGGCGGUgcgcguCUUG-GCGagcGCGGUGUUg -3'
miRNA:   3'- -GCCGCCAauu---GAACaCGC---UGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 71322 0.68 0.850873
Target:  5'- uCGGCGcGuUUAACUcGUggggcucgaggcGCGGCGGCGgCa -3'
miRNA:   3'- -GCCGC-C-AAUUGAaCA------------CGCUGCCGCgG- -5'
21188 3' -54.9 NC_004778.3 + 36203 0.67 0.90763
Target:  5'- aGGCaGaucGCg---GCGAUGGCGCCg -3'
miRNA:   3'- gCCGcCaauUGaacaCGCUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 44102 0.66 0.935479
Target:  5'- gCGGCGGcgAugUcaUGgacgcgggcguuUGCGGCGGCGaCg -3'
miRNA:   3'- -GCCGCCaaUugA--AC------------ACGCUGCCGCgG- -5'
21188 3' -54.9 NC_004778.3 + 110803 0.68 0.842809
Target:  5'- gGGCGGUaGGCg---GCGcGCGGCGUUu -3'
miRNA:   3'- gCCGCCAaUUGaacaCGC-UGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 85701 0.66 0.935479
Target:  5'- gCGGUGGacacaUGAUgUGUcccgGCG-CGGCGCCc -3'
miRNA:   3'- -GCCGCCa----AUUGaACA----CGCuGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 89847 0.67 0.90763
Target:  5'- uGGCGGUca------GCGACGGCGUg -3'
miRNA:   3'- gCCGCCAauugaacaCGCUGCCGCGg -5'
21188 3' -54.9 NC_004778.3 + 30062 0.68 0.83455
Target:  5'- ---aGGUUAuCUUuagacGUGCGuCGGCGCCg -3'
miRNA:   3'- gccgCCAAUuGAA-----CACGCuGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 28235 0.7 0.762432
Target:  5'- uGGCGGgagAACaacaaGCccgGACGGCGCCa -3'
miRNA:   3'- gCCGCCaa-UUGaaca-CG---CUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 104200 0.66 0.933475
Target:  5'- aGGCGGgcGACgacccggcucGCGAUcaucaaaaaugGGCGCCg -3'
miRNA:   3'- gCCGCCaaUUGaaca------CGCUG-----------CCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 107935 0.66 0.930395
Target:  5'- aGGUuucGGccGGCg---GUGGCGGCGCCa -3'
miRNA:   3'- gCCG---CCaaUUGaacaCGCUGCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.