miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21188 3' -54.9 NC_004778.3 + 120404 1.12 0.002196
Target:  5'- gCGGCGGUUAACUUGUGCGACGGCGCCu -3'
miRNA:   3'- -GCCGCCAAUUGAACACGCUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 63495 0.83 0.164855
Target:  5'- gGGCGGauucgGGCUcaUGcUGCGGCGGCGCCa -3'
miRNA:   3'- gCCGCCaa---UUGA--AC-ACGCUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 24207 0.81 0.242357
Target:  5'- aCGuGCaGGUaguuuuuguuguuucUAguaaGCUUGUGCGACGGCGCCg -3'
miRNA:   3'- -GC-CG-CCA---------------AU----UGAACACGCUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 7985 0.8 0.251953
Target:  5'- uGGCGGcaguuACUaUGUGCG-CGGCGCCg -3'
miRNA:   3'- gCCGCCaau--UGA-ACACGCuGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 76434 0.78 0.326505
Target:  5'- gCGGCGGUUGcugugGCggcgGuUGCGGCGGgGCCu -3'
miRNA:   3'- -GCCGCCAAU-----UGaa--C-ACGCUGCCgCGG- -5'
21188 3' -54.9 NC_004778.3 + 56982 0.77 0.373599
Target:  5'- aCGGCGcugGACcUGUGCGGCGG-GCCa -3'
miRNA:   3'- -GCCGCcaaUUGaACACGCUGCCgCGG- -5'
21188 3' -54.9 NC_004778.3 + 61346 0.75 0.471089
Target:  5'- -cGCaGGUUcGGCUucaUGUGCgGACGGCGCCg -3'
miRNA:   3'- gcCG-CCAA-UUGA---ACACG-CUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 76314 0.75 0.499868
Target:  5'- gCGGCGGUU-GCUgugGCGGCGGuUGCUg -3'
miRNA:   3'- -GCCGCCAAuUGAacaCGCUGCC-GCGG- -5'
21188 3' -54.9 NC_004778.3 + 76404 0.75 0.499868
Target:  5'- gCGGCGGUU-GCUgugGCGGCGGuUGCUg -3'
miRNA:   3'- -GCCGCCAAuUGAacaCGCUGCC-GCGG- -5'
21188 3' -54.9 NC_004778.3 + 76374 0.75 0.499868
Target:  5'- gCGGCGGUU-GCUgcgGCGGCGGuUGCUg -3'
miRNA:   3'- -GCCGCCAAuUGAacaCGCUGCC-GCGG- -5'
21188 3' -54.9 NC_004778.3 + 76344 0.75 0.499868
Target:  5'- gCGGCGGUU-GCUgcgGCGGCGGuUGCUg -3'
miRNA:   3'- -GCCGCCAAuUGAacaCGCUGCC-GCGG- -5'
21188 3' -54.9 NC_004778.3 + 52581 0.72 0.628264
Target:  5'- aGGCGGUcgaaAGCcUGUuugaaauuaaaaugGCGaACGGCGCCa -3'
miRNA:   3'- gCCGCCAa---UUGaACA--------------CGC-UGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 60983 0.72 0.662299
Target:  5'- cCGGCGGc-GGCggcgGCGGCGGCGgCg -3'
miRNA:   3'- -GCCGCCaaUUGaacaCGCUGCCGCgG- -5'
21188 3' -54.9 NC_004778.3 + 81799 0.72 0.666413
Target:  5'- gGGCGGcgucuguaaccagAACUccUGCGGCGGCGUCu -3'
miRNA:   3'- gCCGCCaa-----------UUGAacACGCUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 43110 0.71 0.6736
Target:  5'- cCGGCGGcu-GCUgcgcaagcgcuuCGACGGCGCCg -3'
miRNA:   3'- -GCCGCCaauUGAacac--------GCUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 36461 0.71 0.693014
Target:  5'- aCGGCGGU------GUG-GugGGCGCCa -3'
miRNA:   3'- -GCCGCCAauugaaCACgCugCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 35785 0.71 0.703161
Target:  5'- uGGCGGUcuGCgaauggUGUGUGuuuCGGCuGCCc -3'
miRNA:   3'- gCCGCCAauUGa-----ACACGCu--GCCG-CGG- -5'
21188 3' -54.9 NC_004778.3 + 114007 0.71 0.713246
Target:  5'- aGGCGGcgcuGCgagcaGUGCuuugauaucGGCGGCGCCa -3'
miRNA:   3'- gCCGCCaau-UGaa---CACG---------CUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 8809 0.7 0.733198
Target:  5'- gCGGCGGgcgcGCUca-GCGaAUGGCGCCu -3'
miRNA:   3'- -GCCGCCaau-UGAacaCGC-UGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 67802 0.7 0.752793
Target:  5'- gCGGC-GUUGGCgcgcgcugGcUGCG-CGGCGCCa -3'
miRNA:   3'- -GCCGcCAAUUGaa------C-ACGCuGCCGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.