miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21188 3' -54.9 NC_004778.3 + 67802 0.7 0.752793
Target:  5'- gCGGC-GUUGGCgcgcgcugGcUGCG-CGGCGCCa -3'
miRNA:   3'- -GCCGcCAAUUGaa------C-ACGCuGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 17232 0.7 0.762432
Target:  5'- cCGcGCGGcc-GCUaUGcGCGAgGGCGCCg -3'
miRNA:   3'- -GC-CGCCaauUGA-ACaCGCUgCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 28235 0.7 0.762432
Target:  5'- uGGCGGgagAACaacaaGCccgGACGGCGCCa -3'
miRNA:   3'- gCCGCCaa-UUGaaca-CG---CUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 17095 0.69 0.78135
Target:  5'- aGGCcGUguuGC-UGUGCGcGCGGCGCg -3'
miRNA:   3'- gCCGcCAau-UGaACACGC-UGCCGCGg -5'
21188 3' -54.9 NC_004778.3 + 49002 0.69 0.790609
Target:  5'- uGGCacauucGUUGcGCgcgGUGCGGCuGGCGCCg -3'
miRNA:   3'- gCCGc-----CAAU-UGaa-CACGCUG-CCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 92735 0.69 0.808682
Target:  5'- cCGGCGGUgcgcguCUUG-GCGagcGCGGUGUUg -3'
miRNA:   3'- -GCCGCCAauu---GAACaCGC---UGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 32945 0.69 0.812221
Target:  5'- gGGCGGacgacaccgccgcgUGGC-UGUGCGGCcGCGUCg -3'
miRNA:   3'- gCCGCCa-------------AUUGaACACGCUGcCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 27886 0.69 0.817479
Target:  5'- gCGGCGGcgag--UGUGUGGCGGCcaGCg -3'
miRNA:   3'- -GCCGCCaauugaACACGCUGCCG--CGg -5'
21188 3' -54.9 NC_004778.3 + 61577 0.69 0.817479
Target:  5'- gCGGCGGU---CUUGUagucguacGCGcUGGCGCUa -3'
miRNA:   3'- -GCCGCCAauuGAACA--------CGCuGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 30062 0.68 0.83455
Target:  5'- ---aGGUUAuCUUuagacGUGCGuCGGCGCCg -3'
miRNA:   3'- gccgCCAAUuGAA-----CACGCuGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 34906 0.68 0.837877
Target:  5'- gCGGC-GUUAuaccgcaagcgcaugGCaUUGUGCGcgGCGGCGUCg -3'
miRNA:   3'- -GCCGcCAAU---------------UG-AACACGC--UGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 71365 0.68 0.842809
Target:  5'- uCGGCGGga-GCguagGCGAgGGUGUCg -3'
miRNA:   3'- -GCCGCCaauUGaacaCGCUgCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 110803 0.68 0.842809
Target:  5'- gGGCGGUaGGCg---GCGcGCGGCGUUu -3'
miRNA:   3'- gCCGCCAaUUGaacaCGC-UGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 71461 0.68 0.842809
Target:  5'- uCGGCGGgg-GCguagGCGAgGGUGUCg -3'
miRNA:   3'- -GCCGCCaauUGaacaCGCUgCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 71413 0.68 0.842809
Target:  5'- uCGGCGGgg-GCguagGCGAgGGUGUCg -3'
miRNA:   3'- -GCCGCCaauUGaacaCGCUgCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 9013 0.68 0.842809
Target:  5'- gCGGCGGgcugcAUUUGUcGCa--GGCGCCg -3'
miRNA:   3'- -GCCGCCaau--UGAACA-CGcugCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 71317 0.68 0.842809
Target:  5'- uCGGCGGgg-GCguagGCGAgGGUGUCg -3'
miRNA:   3'- -GCCGCCaauUGaacaCGCUgCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 71322 0.68 0.850873
Target:  5'- uCGGCGcGuUUAACUcGUggggcucgaggcGCGGCGGCGgCa -3'
miRNA:   3'- -GCCGC-C-AAUUGAaCA------------CGCUGCCGCgG- -5'
21188 3' -54.9 NC_004778.3 + 104356 0.68 0.850873
Target:  5'- cCGGCGuacgUGACUcgGU-CGGCGcGCGCCu -3'
miRNA:   3'- -GCCGCca--AUUGAa-CAcGCUGC-CGCGG- -5'
21188 3' -54.9 NC_004778.3 + 110179 0.68 0.850873
Target:  5'- aGGCGcacgcGCUUucGCaGACGGCGCCa -3'
miRNA:   3'- gCCGCcaau-UGAAcaCG-CUGCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.