miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21188 3' -54.9 NC_004778.3 + 120943 0.67 0.873093
Target:  5'- gGGCGGUaauacgaUGACUg--GCGG-GGCGCg -3'
miRNA:   3'- gCCGCCA-------AUUGAacaCGCUgCCGCGg -5'
21188 3' -54.9 NC_004778.3 + 120404 1.12 0.002196
Target:  5'- gCGGCGGUUAACUUGUGCGACGGCGCCu -3'
miRNA:   3'- -GCCGCCAAUUGAACACGCUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 118115 0.66 0.930395
Target:  5'- aGGaGuUUGACaaaaucgGCGGCGGCGCCg -3'
miRNA:   3'- gCCgCcAAUUGaaca---CGCUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 117425 0.66 0.913684
Target:  5'- aGaGCGGcUugUUUGUgauaaGCGGCGGCGCg -3'
miRNA:   3'- gC-CGCCaAuuGAACA-----CGCUGCCGCGg -5'
21188 3' -54.9 NC_004778.3 + 114007 0.71 0.713246
Target:  5'- aGGCGGcgcuGCgagcaGUGCuuugauaucGGCGGCGCCa -3'
miRNA:   3'- gCCGCCaau-UGaa---CACG---------CUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 111815 0.66 0.930395
Target:  5'- gCGcCGG-UAACaaGgGCGAgGGCGCCg -3'
miRNA:   3'- -GCcGCCaAUUGaaCaCGCUgCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 110803 0.68 0.842809
Target:  5'- gGGCGGUaGGCg---GCGcGCGGCGUUu -3'
miRNA:   3'- gCCGCCAaUUGaacaCGC-UGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 110179 0.68 0.850873
Target:  5'- aGGCGcacgcGCUUucGCaGACGGCGCCa -3'
miRNA:   3'- gCCGCcaau-UGAAcaCG-CUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 110001 0.66 0.919497
Target:  5'- uCGGUGG-UGACcacgGUGUuuCGGCGCg -3'
miRNA:   3'- -GCCGCCaAUUGaa--CACGcuGCCGCGg -5'
21188 3' -54.9 NC_004778.3 + 107935 0.66 0.930395
Target:  5'- aGGUuucGGccGGCg---GUGGCGGCGCCa -3'
miRNA:   3'- gCCG---CCaaUUGaacaCGCUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 106203 0.66 0.913684
Target:  5'- gCGGCGGUg---UUG-GCuuuGCGGUGCCc -3'
miRNA:   3'- -GCCGCCAauugAACaCGc--UGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 104356 0.68 0.850873
Target:  5'- cCGGCGuacgUGACUcgGU-CGGCGcGCGCCu -3'
miRNA:   3'- -GCCGCca--AUUGAa-CAcGCUGC-CGCGG- -5'
21188 3' -54.9 NC_004778.3 + 104200 0.66 0.933475
Target:  5'- aGGCGGgcGACgacccggcucGCGAUcaucaaaaaugGGCGCCg -3'
miRNA:   3'- gCCGCCaaUUGaaca------CGCUG-----------CCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 92735 0.69 0.808682
Target:  5'- cCGGCGGUgcgcguCUUG-GCGagcGCGGUGUUg -3'
miRNA:   3'- -GCCGCCAauu---GAACaCGC---UGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 89847 0.67 0.90763
Target:  5'- uGGCGGUca------GCGACGGCGUg -3'
miRNA:   3'- gCCGCCAauugaacaCGCUGCCGCGg -5'
21188 3' -54.9 NC_004778.3 + 85701 0.66 0.935479
Target:  5'- gCGGUGGacacaUGAUgUGUcccgGCG-CGGCGCCc -3'
miRNA:   3'- -GCCGCCa----AUUGaACA----CGCuGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 84118 0.66 0.930395
Target:  5'- cCGGCGGcgAGCgcacacaGCgGACGGCGUUc -3'
miRNA:   3'- -GCCGCCaaUUGaaca---CG-CUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 83021 0.67 0.901336
Target:  5'- --aUGGUcAGgUUGUGCGACGcggcacGCGCCa -3'
miRNA:   3'- gccGCCAaUUgAACACGCUGC------CGCGG- -5'
21188 3' -54.9 NC_004778.3 + 81799 0.72 0.666413
Target:  5'- gGGCGGcgucuguaaccagAACUccUGCGGCGGCGUCu -3'
miRNA:   3'- gCCGCCaa-----------UUGAacACGCUGCCGCGG- -5'
21188 3' -54.9 NC_004778.3 + 81753 0.68 0.858735
Target:  5'- gCGGCGGgUGGCggac-CGACuGCGCCg -3'
miRNA:   3'- -GCCGCCaAUUGaacacGCUGcCGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.