miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21188 5' -54.3 NC_004778.3 + 55965 0.67 0.886961
Target:  5'- uGCAcGCacaugUCGCCGCCCAcGUccUGCAUGu -3'
miRNA:   3'- -CGU-CG-----GGCGGCGGGUuUAuaACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 57765 0.67 0.872413
Target:  5'- --cGCCCGCCGCgCCAAGcgccaCACGu -3'
miRNA:   3'- cguCGGGCGGCG-GGUUUauaacGUGC- -5'
21188 5' -54.3 NC_004778.3 + 59443 0.66 0.935418
Target:  5'- -uGGCgUCGCUGCCCA---GUUGCAgGu -3'
miRNA:   3'- cgUCG-GGCGGCGGGUuuaUAACGUgC- -5'
21188 5' -54.3 NC_004778.3 + 59718 0.66 0.915587
Target:  5'- cGCAGCCagugcacaaacuuuuCGUCGCgCAGGUuggucUUGCACa -3'
miRNA:   3'- -CGUCGG---------------GCGGCGgGUUUAu----AACGUGc -5'
21188 5' -54.3 NC_004778.3 + 63199 0.68 0.864795
Target:  5'- cGCGGCUgGCUGCCCGGAUGa------ -3'
miRNA:   3'- -CGUCGGgCGGCGGGUUUAUaacgugc -5'
21188 5' -54.3 NC_004778.3 + 63364 0.67 0.900562
Target:  5'- gGCAGCCUauguuGuuGCCCGuGUAUgcGUACGc -3'
miRNA:   3'- -CGUCGGG-----CggCGGGUuUAUAa-CGUGC- -5'
21188 5' -54.3 NC_004778.3 + 64130 0.67 0.900562
Target:  5'- aGCAGgUCGuuGCCCGAuucUGUgcaaacguugGCGCGg -3'
miRNA:   3'- -CGUCgGGCggCGGGUUu--AUAa---------CGUGC- -5'
21188 5' -54.3 NC_004778.3 + 64644 0.68 0.832183
Target:  5'- cGCAGCgCgCGUCGCCCGAAcaa-GCAUa -3'
miRNA:   3'- -CGUCG-G-GCGGCGGGUUUauaaCGUGc -5'
21188 5' -54.3 NC_004778.3 + 64779 0.67 0.893882
Target:  5'- uGUGGCCCGCgccguugaaagCGCaCGGAUGUgcaUGCACGc -3'
miRNA:   3'- -CGUCGGGCG-----------GCGgGUUUAUA---ACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 65291 0.66 0.930237
Target:  5'- --cGCCCaCCGCgCCAAcguUUGCACa -3'
miRNA:   3'- cguCGGGcGGCG-GGUUuauAACGUGc -5'
21188 5' -54.3 NC_004778.3 + 66253 0.68 0.856956
Target:  5'- gGCAGCCaGCCGCgCAcGUuucaaacggUGCACa -3'
miRNA:   3'- -CGUCGGgCGGCGgGUuUAua-------ACGUGc -5'
21188 5' -54.3 NC_004778.3 + 70332 0.66 0.913183
Target:  5'- uGCAGUugcaCGCgGCCCAcAUAgcGCACc -3'
miRNA:   3'- -CGUCGg---GCGgCGGGUuUAUaaCGUGc -5'
21188 5' -54.3 NC_004778.3 + 72457 0.69 0.796508
Target:  5'- -uGGCCCGCCGCaCAGGUccaGCGCc -3'
miRNA:   3'- cgUCGGGCGGCGgGUUUAuaaCGUGc -5'
21188 5' -54.3 NC_004778.3 + 72537 0.68 0.843972
Target:  5'- aGCAGCgcggacgacgcuCCGuuGCCCGAucaaaaagacgUGCGCGa -3'
miRNA:   3'- -CGUCG------------GGCggCGGGUUuaua-------ACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 79345 0.73 0.582644
Target:  5'- gGCGGCCC-CCGCCguGGUAUaucgaucGCGCGg -3'
miRNA:   3'- -CGUCGGGcGGCGGguUUAUAa------CGUGC- -5'
21188 5' -54.3 NC_004778.3 + 79593 0.7 0.7385
Target:  5'- uGCAGCCCGCaagcgCGCCCG-----UGCGgGg -3'
miRNA:   3'- -CGUCGGGCG-----GCGGGUuuauaACGUgC- -5'
21188 5' -54.3 NC_004778.3 + 80283 0.69 0.823531
Target:  5'- gGCAGCUCaUCGCCCGAcUGggcgUGCAUa -3'
miRNA:   3'- -CGUCGGGcGGCGGGUUuAUa---ACGUGc -5'
21188 5' -54.3 NC_004778.3 + 81542 0.66 0.912575
Target:  5'- -uGGCCCGCUaGCCCAAAgagcuccucgucgccGCACa -3'
miRNA:   3'- cgUCGGGCGG-CGGGUUUauaa-----------CGUGc -5'
21188 5' -54.3 NC_004778.3 + 86309 0.67 0.899905
Target:  5'- uGCGGCgCGCCGCggcgccgUCGAAgcgcUUGCGCa -3'
miRNA:   3'- -CGUCGgGCGGCG-------GGUUUau--AACGUGc -5'
21188 5' -54.3 NC_004778.3 + 86927 0.66 0.930237
Target:  5'- aGCAGCCCGuuGUCgg------GCACGc -3'
miRNA:   3'- -CGUCGGGCggCGGguuuauaaCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.