miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21188 5' -54.3 NC_004778.3 + 30818 0.66 0.935418
Target:  5'- gGCAGCUCGaCCGgCCGcuggaGGUGguagGCAUGa -3'
miRNA:   3'- -CGUCGGGC-GGCgGGU-----UUAUaa--CGUGC- -5'
21188 5' -54.3 NC_004778.3 + 32276 0.66 0.935418
Target:  5'- aGCAGCgCCaaCGCCCAGcaa-UGCACc -3'
miRNA:   3'- -CGUCG-GGcgGCGGGUUuauaACGUGc -5'
21188 5' -54.3 NC_004778.3 + 33088 0.7 0.748471
Target:  5'- aGCGGCCCGCUGCCgCGcuacacGUACa -3'
miRNA:   3'- -CGUCGGGCGGCGG-GUuuauaaCGUGc -5'
21188 5' -54.3 NC_004778.3 + 33665 0.71 0.696708
Target:  5'- cGCGGCCggcgcgcUGCCGCgCGGAUAgcgcccgGCGCGg -3'
miRNA:   3'- -CGUCGG-------GCGGCGgGUUUAUaa-----CGUGC- -5'
21188 5' -54.3 NC_004778.3 + 33833 0.69 0.823531
Target:  5'- gGCAGCCUGCgCGCUCAacgccGAUAaccGCugGu -3'
miRNA:   3'- -CGUCGGGCG-GCGGGU-----UUAUaa-CGugC- -5'
21188 5' -54.3 NC_004778.3 + 34712 0.67 0.872413
Target:  5'- aGCAGCCagaCGCCCGugcugggAUUGCAgGa -3'
miRNA:   3'- -CGUCGGgcgGCGGGUuua----UAACGUgC- -5'
21188 5' -54.3 NC_004778.3 + 35139 0.68 0.840643
Target:  5'- uGCuGCCgGCCGaCgCAAAUugcgcGUUGCACa -3'
miRNA:   3'- -CGuCGGgCGGC-GgGUUUA-----UAACGUGc -5'
21188 5' -54.3 NC_004778.3 + 37744 0.66 0.924804
Target:  5'- cGCAGCCCGCUuaUUucAAUGUuggcaauuUGCGCGu -3'
miRNA:   3'- -CGUCGGGCGGcgGGu-UUAUA--------ACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 40242 0.66 0.924804
Target:  5'- aUAGCCaGgCGCCCAAAaagacggGCGCGg -3'
miRNA:   3'- cGUCGGgCgGCGGGUUUauaa---CGUGC- -5'
21188 5' -54.3 NC_004778.3 + 42632 0.69 0.805685
Target:  5'- uGCGuuCCCGCCGCCgAcgg--UGCACGa -3'
miRNA:   3'- -CGUc-GGGCGGCGGgUuuauaACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 43143 0.68 0.861686
Target:  5'- cGCGGCgCGCCGCacguuuuugaacgCGGGUuuggUGCACGa -3'
miRNA:   3'- -CGUCGgGCGGCGg------------GUUUAua--ACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 43985 0.72 0.635049
Target:  5'- -uGGCgCGCCGCCCAAc----GCGCGg -3'
miRNA:   3'- cgUCGgGCGGCGGGUUuauaaCGUGC- -5'
21188 5' -54.3 NC_004778.3 + 45538 0.66 0.913183
Target:  5'- cGCAGCCCGUCGCggaauCCAcugcaAGUcgUuaacgcGCACGu -3'
miRNA:   3'- -CGUCGGGCGGCG-----GGU-----UUAuaA------CGUGC- -5'
21188 5' -54.3 NC_004778.3 + 46167 0.66 0.930237
Target:  5'- cGCGGagCCGCCGCgCCGuucc--GCGCGu -3'
miRNA:   3'- -CGUCg-GGCGGCG-GGUuuauaaCGUGC- -5'
21188 5' -54.3 NC_004778.3 + 46220 0.85 0.124179
Target:  5'- uGCAGCuggCCGCCGCUgAAAUGUUGCACa -3'
miRNA:   3'- -CGUCG---GGCGGCGGgUUUAUAACGUGc -5'
21188 5' -54.3 NC_004778.3 + 46836 0.67 0.87761
Target:  5'- gGCGGCUCGCCGCCuCAuccaacacuaCACGc -3'
miRNA:   3'- -CGUCGGGCGGCGG-GUuuauaac---GUGC- -5'
21188 5' -54.3 NC_004778.3 + 47690 0.73 0.603548
Target:  5'- cGCAGucgguccgccaCCCGCCGCgCCGGAUAUcGCAgGc -3'
miRNA:   3'- -CGUC-----------GGGCGGCG-GGUUUAUAaCGUgC- -5'
21188 5' -54.3 NC_004778.3 + 49055 0.66 0.919119
Target:  5'- aCAGCggGUCGCCCGGGUuagGCACu -3'
miRNA:   3'- cGUCGggCGGCGGGUUUAuaaCGUGc -5'
21188 5' -54.3 NC_004778.3 + 52521 0.73 0.561891
Target:  5'- cCAGCCgGCCGgCCAAcugcGUGUUGCAa- -3'
miRNA:   3'- cGUCGGgCGGCgGGUU----UAUAACGUgc -5'
21188 5' -54.3 NC_004778.3 + 55917 0.69 0.823531
Target:  5'- aGCuGCUgCGCCGCCgA---AUUGCGCGu -3'
miRNA:   3'- -CGuCGG-GCGGCGGgUuuaUAACGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.