miRNA display CGI


Results 1 - 20 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21188 5' -54.3 NC_004778.3 + 1599 0.68 0.840643
Target:  5'- uGCGGCCCGuCCGCgcacuccuUCAAAcacacGUUGCGCu -3'
miRNA:   3'- -CGUCGGGC-GGCG--------GGUUUa----UAACGUGc -5'
21188 5' -54.3 NC_004778.3 + 1729 0.66 0.930237
Target:  5'- aCAGUCCG-CGCUCAAAcacggUGUACGg -3'
miRNA:   3'- cGUCGGGCgGCGGGUUUaua--ACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 2409 0.7 0.7385
Target:  5'- --uGCCCG-CGCCCGAcgaccacuuUAUUGCGCGu -3'
miRNA:   3'- cguCGGGCgGCGGGUUu--------AUAACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 2442 0.67 0.872413
Target:  5'- ---aCCUGUgGCCCGAGUGcgGCACGc -3'
miRNA:   3'- cgucGGGCGgCGGGUUUAUaaCGUGC- -5'
21188 5' -54.3 NC_004778.3 + 3480 0.68 0.844799
Target:  5'- uGCAGCuCCGCCGCCUuuuccuccugaaCGCGg -3'
miRNA:   3'- -CGUCG-GGCGGCGGGuuuauaac----GUGC- -5'
21188 5' -54.3 NC_004778.3 + 5257 0.66 0.924804
Target:  5'- uGCGGUuuGUucacaacaaCGCCCAGuacaccgUGCACGg -3'
miRNA:   3'- -CGUCGggCG---------GCGGGUUuaua---ACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 5372 0.66 0.924804
Target:  5'- uCAGCgCGCCGUgCAuc---UGCACGa -3'
miRNA:   3'- cGUCGgGCGGCGgGUuuauaACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 8033 0.68 0.856956
Target:  5'- cGCGuGCCUGCUGCUCAGcc---GCACGu -3'
miRNA:   3'- -CGU-CGGGCGGCGGGUUuauaaCGUGC- -5'
21188 5' -54.3 NC_004778.3 + 9886 0.66 0.919119
Target:  5'- cGCcGCCaaaguGCCGCCCGGGcgcggugUGCGCu -3'
miRNA:   3'- -CGuCGGg----CGGCGGGUUUaua----ACGUGc -5'
21188 5' -54.3 NC_004778.3 + 10668 0.73 0.593081
Target:  5'- cCGGCCgCGCCgcGCCCGAAgcgugGCACGu -3'
miRNA:   3'- cGUCGG-GCGG--CGGGUUUauaa-CGUGC- -5'
21188 5' -54.3 NC_004778.3 + 14136 0.74 0.539301
Target:  5'- uGCGGCCgGCCGCCuCAAuuuuuucgGCGCa -3'
miRNA:   3'- -CGUCGGgCGGCGG-GUUuauaa---CGUGc -5'
21188 5' -54.3 NC_004778.3 + 15192 0.69 0.777696
Target:  5'- cCAGCCUuguGCCGCCCGAAUAcgguuucagguUUGacaACGu -3'
miRNA:   3'- cGUCGGG---CGGCGGGUUUAU-----------AACg--UGC- -5'
21188 5' -54.3 NC_004778.3 + 15547 0.67 0.900562
Target:  5'- cGCGGCgCCGCCuucGCCCGAc----GCGCc -3'
miRNA:   3'- -CGUCG-GGCGG---CGGGUUuauaaCGUGc -5'
21188 5' -54.3 NC_004778.3 + 18692 0.69 0.805685
Target:  5'- aGCAGUCgcucuUGCgGCCUucAUGUUGCACa -3'
miRNA:   3'- -CGUCGG-----GCGgCGGGuuUAUAACGUGc -5'
21188 5' -54.3 NC_004778.3 + 20937 0.76 0.424906
Target:  5'- cGCAGCCCagccgGCCGCCCGA---UUGCcCGu -3'
miRNA:   3'- -CGUCGGG-----CGGCGGGUUuauAACGuGC- -5'
21188 5' -54.3 NC_004778.3 + 21101 0.7 0.748471
Target:  5'- uGCAGCCCGCggagcggacguUGCCCAGAUc--GC-CGa -3'
miRNA:   3'- -CGUCGGGCG-----------GCGGGUUUAuaaCGuGC- -5'
21188 5' -54.3 NC_004778.3 + 21667 0.69 0.805685
Target:  5'- cGCAacGCgaCGCCGCCCGAcgA--GCGCGa -3'
miRNA:   3'- -CGU--CGg-GCGGCGGGUUuaUaaCGUGC- -5'
21188 5' -54.3 NC_004778.3 + 25803 0.66 0.924804
Target:  5'- cGCuGcCCCGCCGCgCUAGugcUGUcUGCACu -3'
miRNA:   3'- -CGuC-GGGCGGCG-GGUUu--AUA-ACGUGc -5'
21188 5' -54.3 NC_004778.3 + 28332 0.68 0.840643
Target:  5'- -aAGUgCCGCUGCCCAAucucucgcaucUGUUGUACGg -3'
miRNA:   3'- cgUCG-GGCGGCGGGUUu----------AUAACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 30732 0.66 0.924804
Target:  5'- cGCGGCCgGCUGCCauCGAAaGUU-CGCGu -3'
miRNA:   3'- -CGUCGGgCGGCGG--GUUUaUAAcGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.