miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21188 5' -54.3 NC_004778.3 + 120440 1.1 0.002798
Target:  5'- uGCAGCCCGCCGCCCAAAUAUUGCACGc -3'
miRNA:   3'- -CGUCGGGCGGCGGGUUUAUAACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 46220 0.85 0.124179
Target:  5'- uGCAGCuggCCGCCGCUgAAAUGUUGCACa -3'
miRNA:   3'- -CGUCG---GGCGGCGGgUUUAUAACGUGc -5'
21188 5' -54.3 NC_004778.3 + 20937 0.76 0.424906
Target:  5'- cGCAGCCCagccgGCCGCCCGA---UUGCcCGu -3'
miRNA:   3'- -CGUCGGG-----CGGCGGGUUuauAACGuGC- -5'
21188 5' -54.3 NC_004778.3 + 112221 0.76 0.434053
Target:  5'- aGCGGCCgCGCgGUCCAGGUGauaGCACGc -3'
miRNA:   3'- -CGUCGG-GCGgCGGGUUUAUaa-CGUGC- -5'
21188 5' -54.3 NC_004778.3 + 14136 0.74 0.539301
Target:  5'- uGCGGCCgGCCGCCuCAAuuuuuucgGCGCa -3'
miRNA:   3'- -CGUCGGgCGGCGG-GUUuauaa---CGUGc -5'
21188 5' -54.3 NC_004778.3 + 52521 0.73 0.561891
Target:  5'- cCAGCCgGCCGgCCAAcugcGUGUUGCAa- -3'
miRNA:   3'- cGUCGGgCGGCgGGUU----UAUAACGUgc -5'
21188 5' -54.3 NC_004778.3 + 97170 0.73 0.572245
Target:  5'- aCGGCgCCGCCGgCCAGcg--UGCGCGg -3'
miRNA:   3'- cGUCG-GGCGGCgGGUUuauaACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 111675 0.73 0.57952
Target:  5'- uCAGCCCGCCGUugucggcuagcaggCCGAGcUGUUGCAgCGu -3'
miRNA:   3'- cGUCGGGCGGCG--------------GGUUU-AUAACGU-GC- -5'
21188 5' -54.3 NC_004778.3 + 79345 0.73 0.582644
Target:  5'- gGCGGCCC-CCGCCguGGUAUaucgaucGCGCGg -3'
miRNA:   3'- -CGUCGGGcGGCGGguUUAUAa------CGUGC- -5'
21188 5' -54.3 NC_004778.3 + 10668 0.73 0.593081
Target:  5'- cCGGCCgCGCCgcGCCCGAAgcgugGCACGu -3'
miRNA:   3'- cGUCGG-GCGG--CGGGUUUauaa-CGUGC- -5'
21188 5' -54.3 NC_004778.3 + 47690 0.73 0.603548
Target:  5'- cGCAGucgguccgccaCCCGCCGCgCCGGAUAUcGCAgGc -3'
miRNA:   3'- -CGUC-----------GGGCGGCG-GGUUUAUAaCGUgC- -5'
21188 5' -54.3 NC_004778.3 + 43985 0.72 0.635049
Target:  5'- -uGGCgCGCCGCCCAAc----GCGCGg -3'
miRNA:   3'- cgUCGgGCGGCGGGUUuauaaCGUGC- -5'
21188 5' -54.3 NC_004778.3 + 106299 0.71 0.687382
Target:  5'- cGCccguGCCCGCCGCagccccagccCCGGuuugAUUGCGCGc -3'
miRNA:   3'- -CGu---CGGGCGGCG----------GGUUua--UAACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 33665 0.71 0.696708
Target:  5'- cGCGGCCggcgcgcUGCCGCgCGGAUAgcgcccgGCGCGg -3'
miRNA:   3'- -CGUCGG-------GCGGCGgGUUUAUaa-----CGUGC- -5'
21188 5' -54.3 NC_004778.3 + 120644 0.7 0.727421
Target:  5'- aGCGcGCCCGCCGCCUcgccgcuGAAgcugcUGCGCc -3'
miRNA:   3'- -CGU-CGGGCGGCGGG-------UUUaua--ACGUGc -5'
21188 5' -54.3 NC_004778.3 + 2409 0.7 0.7385
Target:  5'- --uGCCCG-CGCCCGAcgaccacuuUAUUGCGCGu -3'
miRNA:   3'- cguCGGGCgGCGGGUUu--------AUAACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 79593 0.7 0.7385
Target:  5'- uGCAGCCCGCaagcgCGCCCG-----UGCGgGg -3'
miRNA:   3'- -CGUCGGGCG-----GCGGGUuuauaACGUgC- -5'
21188 5' -54.3 NC_004778.3 + 33088 0.7 0.748471
Target:  5'- aGCGGCCCGCUGCCgCGcuacacGUACa -3'
miRNA:   3'- -CGUCGGGCGGCGG-GUuuauaaCGUGc -5'
21188 5' -54.3 NC_004778.3 + 21101 0.7 0.748471
Target:  5'- uGCAGCCCGCggagcggacguUGCCCAGAUc--GC-CGa -3'
miRNA:   3'- -CGUCGGGCG-----------GCGGGUUUAuaaCGuGC- -5'
21188 5' -54.3 NC_004778.3 + 15192 0.69 0.777696
Target:  5'- cCAGCCUuguGCCGCCCGAAUAcgguuucagguUUGacaACGu -3'
miRNA:   3'- cGUCGGG---CGGCGGGUUUAU-----------AACg--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.