miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21188 5' -54.3 NC_004778.3 + 121151 0.69 0.784347
Target:  5'- -aAGCCCaagucgccaauuagGUCGCCCAG--GUUGUACGg -3'
miRNA:   3'- cgUCGGG--------------CGGCGGGUUuaUAACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 72457 0.69 0.796508
Target:  5'- -uGGCCCGCCGCaCAGGUccaGCGCc -3'
miRNA:   3'- cgUCGGGCGGCGgGUUUAuaaCGUGc -5'
21188 5' -54.3 NC_004778.3 + 121421 0.69 0.796508
Target:  5'- aGCAGCCCcuucgaaaacGCCGCgCA---GUUGUACa -3'
miRNA:   3'- -CGUCGGG----------CGGCGgGUuuaUAACGUGc -5'
21188 5' -54.3 NC_004778.3 + 42632 0.69 0.805685
Target:  5'- uGCGuuCCCGCCGCCgAcgg--UGCACGa -3'
miRNA:   3'- -CGUc-GGGCGGCGGgUuuauaACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 21667 0.69 0.805685
Target:  5'- cGCAacGCgaCGCCGCCCGAcgA--GCGCGa -3'
miRNA:   3'- -CGU--CGg-GCGGCGGGUUuaUaaCGUGC- -5'
21188 5' -54.3 NC_004778.3 + 18692 0.69 0.805685
Target:  5'- aGCAGUCgcucuUGCgGCCUucAUGUUGCACa -3'
miRNA:   3'- -CGUCGG-----GCGgCGGGuuUAUAACGUGc -5'
21188 5' -54.3 NC_004778.3 + 55917 0.69 0.823531
Target:  5'- aGCuGCUgCGCCGCCgA---AUUGCGCGu -3'
miRNA:   3'- -CGuCGG-GCGGCGGgUuuaUAACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 33833 0.69 0.823531
Target:  5'- gGCAGCCUGCgCGCUCAacgccGAUAaccGCugGu -3'
miRNA:   3'- -CGUCGGGCG-GCGGGU-----UUAUaa-CGugC- -5'
21188 5' -54.3 NC_004778.3 + 80283 0.69 0.823531
Target:  5'- gGCAGCUCaUCGCCCGAcUGggcgUGCAUa -3'
miRNA:   3'- -CGUCGGGcGGCGGGUUuAUa---ACGUGc -5'
21188 5' -54.3 NC_004778.3 + 64644 0.68 0.832183
Target:  5'- cGCAGCgCgCGUCGCCCGAAcaa-GCAUa -3'
miRNA:   3'- -CGUCG-G-GCGGCGGGUUUauaaCGUGc -5'
21188 5' -54.3 NC_004778.3 + 121881 0.68 0.840643
Target:  5'- aCGG-CCGuuGCCCAAGUuacgcgUGCugGg -3'
miRNA:   3'- cGUCgGGCggCGGGUUUAua----ACGugC- -5'
21188 5' -54.3 NC_004778.3 + 35139 0.68 0.840643
Target:  5'- uGCuGCCgGCCGaCgCAAAUugcgcGUUGCACa -3'
miRNA:   3'- -CGuCGGgCGGC-GgGUUUA-----UAACGUGc -5'
21188 5' -54.3 NC_004778.3 + 28332 0.68 0.840643
Target:  5'- -aAGUgCCGCUGCCCAAucucucgcaucUGUUGUACGg -3'
miRNA:   3'- cgUCG-GGCGGCGGGUUu----------AUAACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 1599 0.68 0.840643
Target:  5'- uGCGGCCCGuCCGCgcacuccuUCAAAcacacGUUGCGCu -3'
miRNA:   3'- -CGUCGGGC-GGCG--------GGUUUa----UAACGUGc -5'
21188 5' -54.3 NC_004778.3 + 72537 0.68 0.843972
Target:  5'- aGCAGCgcggacgacgcuCCGuuGCCCGAucaaaaagacgUGCGCGa -3'
miRNA:   3'- -CGUCG------------GGCggCGGGUUuaua-------ACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 3480 0.68 0.844799
Target:  5'- uGCAGCuCCGCCGCCUuuuccuccugaaCGCGg -3'
miRNA:   3'- -CGUCG-GGCGGCGGGuuuauaac----GUGC- -5'
21188 5' -54.3 NC_004778.3 + 120976 0.68 0.848903
Target:  5'- cGC-GCCCGCUGCCCcg-----GCGCc -3'
miRNA:   3'- -CGuCGGGCGGCGGGuuuauaaCGUGc -5'
21188 5' -54.3 NC_004778.3 + 66253 0.68 0.856956
Target:  5'- gGCAGCCaGCCGCgCAcGUuucaaacggUGCACa -3'
miRNA:   3'- -CGUCGGgCGGCGgGUuUAua-------ACGUGc -5'
21188 5' -54.3 NC_004778.3 + 125055 0.68 0.856956
Target:  5'- cCAGgaCCGCUGCCCGAcgAU-GCugGu -3'
miRNA:   3'- cGUCg-GGCGGCGGGUUuaUAaCGugC- -5'
21188 5' -54.3 NC_004778.3 + 8033 0.68 0.856956
Target:  5'- cGCGuGCCUGCUGCUCAGcc---GCACGu -3'
miRNA:   3'- -CGU-CGGGCGGCGGGUUuauaaCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.