miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21188 5' -54.3 NC_004778.3 + 81542 0.66 0.912575
Target:  5'- -uGGCCCGCUaGCCCAAAgagcuccucgucgccGCACa -3'
miRNA:   3'- cgUCGGGCGG-CGGGUUUauaa-----------CGUGc -5'
21188 5' -54.3 NC_004778.3 + 92890 0.67 0.906996
Target:  5'- cGC-GCgCGCCGguUCCAAAUGcgGCGCGu -3'
miRNA:   3'- -CGuCGgGCGGC--GGGUUUAUaaCGUGC- -5'
21188 5' -54.3 NC_004778.3 + 63364 0.67 0.900562
Target:  5'- gGCAGCCUauguuGuuGCCCGuGUAUgcGUACGc -3'
miRNA:   3'- -CGUCGGG-----CggCGGGUuUAUAa-CGUGC- -5'
21188 5' -54.3 NC_004778.3 + 95784 0.67 0.900562
Target:  5'- gGCAGCgCGCCGgCCGcgc--UGCGCc -3'
miRNA:   3'- -CGUCGgGCGGCgGGUuuauaACGUGc -5'
21188 5' -54.3 NC_004778.3 + 64130 0.67 0.900562
Target:  5'- aGCAGgUCGuuGCCCGAuucUGUgcaaacguugGCGCGg -3'
miRNA:   3'- -CGUCgGGCggCGGGUUu--AUAa---------CGUGC- -5'
21188 5' -54.3 NC_004778.3 + 121395 0.67 0.900562
Target:  5'- uCAGCCCGCgGC---GAUGggUGCACGc -3'
miRNA:   3'- cGUCGGGCGgCGgguUUAUa-ACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 15547 0.67 0.900562
Target:  5'- cGCGGCgCCGCCuucGCCCGAc----GCGCc -3'
miRNA:   3'- -CGUCG-GGCGG---CGGGUUuauaaCGUGc -5'
21188 5' -54.3 NC_004778.3 + 86309 0.67 0.899905
Target:  5'- uGCGGCgCGCCGCggcgccgUCGAAgcgcUUGCGCa -3'
miRNA:   3'- -CGUCGgGCGGCG-------GGUUUau--AACGUGc -5'
21188 5' -54.3 NC_004778.3 + 89856 0.67 0.893882
Target:  5'- cGUAGgCUGCCGCggAGAUGUUGC-CGc -3'
miRNA:   3'- -CGUCgGGCGGCGggUUUAUAACGuGC- -5'
21188 5' -54.3 NC_004778.3 + 64779 0.67 0.893882
Target:  5'- uGUGGCCCGCgccguugaaagCGCaCGGAUGUgcaUGCACGc -3'
miRNA:   3'- -CGUCGGGCG-----------GCGgGUUUAUA---ACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 55965 0.67 0.886961
Target:  5'- uGCAcGCacaugUCGCCGCCCAcGUccUGCAUGu -3'
miRNA:   3'- -CGU-CG-----GGCGGCGGGUuUAuaACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 93377 0.67 0.886961
Target:  5'- aGCAGCgaaaCUGCCCGAggauGUcgUGCACGg -3'
miRNA:   3'- -CGUCGggc-GGCGGGUU----UAuaACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 112355 0.67 0.882695
Target:  5'- cGCAGCCuCGCCGaCUAAAUgccagcuugaccgcaAgcGCGCGg -3'
miRNA:   3'- -CGUCGG-GCGGCgGGUUUA---------------UaaCGUGC- -5'
21188 5' -54.3 NC_004778.3 + 107952 0.67 0.879803
Target:  5'- gGCGGCgCCaucCgGCCCGAuuuUGUUGUACGc -3'
miRNA:   3'- -CGUCG-GGc--GgCGGGUUu--AUAACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 96367 0.67 0.879803
Target:  5'- aGCGGgCCGCUGCaCC----GUUGCGCc -3'
miRNA:   3'- -CGUCgGGCGGCG-GGuuuaUAACGUGc -5'
21188 5' -54.3 NC_004778.3 + 103796 0.67 0.879803
Target:  5'- cCGGCCC-CCGCgCAAGc-UUGCACa -3'
miRNA:   3'- cGUCGGGcGGCGgGUUUauAACGUGc -5'
21188 5' -54.3 NC_004778.3 + 46836 0.67 0.87761
Target:  5'- gGCGGCUCGCCGCCuCAuccaacacuaCACGc -3'
miRNA:   3'- -CGUCGGGCGGCGG-GUuuauaac---GUGC- -5'
21188 5' -54.3 NC_004778.3 + 57765 0.67 0.872413
Target:  5'- --cGCCCGCCGCgCCAAGcgccaCACGu -3'
miRNA:   3'- cguCGGGCGGCG-GGUUUauaacGUGC- -5'
21188 5' -54.3 NC_004778.3 + 2442 0.67 0.872413
Target:  5'- ---aCCUGUgGCCCGAGUGcgGCACGc -3'
miRNA:   3'- cgucGGGCGgCGGGUUUAUaaCGUGC- -5'
21188 5' -54.3 NC_004778.3 + 34712 0.67 0.872413
Target:  5'- aGCAGCCagaCGCCCGugcugggAUUGCAgGa -3'
miRNA:   3'- -CGUCGGgcgGCGGGUuua----UAACGUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.