Results 41 - 60 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21188 | 5' | -54.3 | NC_004778.3 | + | 63199 | 0.68 | 0.864795 |
Target: 5'- cGCGGCUgGCUGCCCGGAUGa------ -3' miRNA: 3'- -CGUCGGgCGGCGGGUUUAUaacgugc -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 43143 | 0.68 | 0.861686 |
Target: 5'- cGCGGCgCGCCGCacguuuuugaacgCGGGUuuggUGCACGa -3' miRNA: 3'- -CGUCGgGCGGCGg------------GUUUAua--ACGUGC- -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 66253 | 0.68 | 0.856956 |
Target: 5'- gGCAGCCaGCCGCgCAcGUuucaaacggUGCACa -3' miRNA: 3'- -CGUCGGgCGGCGgGUuUAua-------ACGUGc -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 8033 | 0.68 | 0.856956 |
Target: 5'- cGCGuGCCUGCUGCUCAGcc---GCACGu -3' miRNA: 3'- -CGU-CGGGCGGCGGGUUuauaaCGUGC- -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 125055 | 0.68 | 0.856956 |
Target: 5'- cCAGgaCCGCUGCCCGAcgAU-GCugGu -3' miRNA: 3'- cGUCg-GGCGGCGGGUUuaUAaCGugC- -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 120976 | 0.68 | 0.848903 |
Target: 5'- cGC-GCCCGCUGCCCcg-----GCGCc -3' miRNA: 3'- -CGuCGGGCGGCGGGuuuauaaCGUGc -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 3480 | 0.68 | 0.844799 |
Target: 5'- uGCAGCuCCGCCGCCUuuuccuccugaaCGCGg -3' miRNA: 3'- -CGUCG-GGCGGCGGGuuuauaac----GUGC- -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 72537 | 0.68 | 0.843972 |
Target: 5'- aGCAGCgcggacgacgcuCCGuuGCCCGAucaaaaagacgUGCGCGa -3' miRNA: 3'- -CGUCG------------GGCggCGGGUUuaua-------ACGUGC- -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 121881 | 0.68 | 0.840643 |
Target: 5'- aCGG-CCGuuGCCCAAGUuacgcgUGCugGg -3' miRNA: 3'- cGUCgGGCggCGGGUUUAua----ACGugC- -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 35139 | 0.68 | 0.840643 |
Target: 5'- uGCuGCCgGCCGaCgCAAAUugcgcGUUGCACa -3' miRNA: 3'- -CGuCGGgCGGC-GgGUUUA-----UAACGUGc -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 1599 | 0.68 | 0.840643 |
Target: 5'- uGCGGCCCGuCCGCgcacuccuUCAAAcacacGUUGCGCu -3' miRNA: 3'- -CGUCGGGC-GGCG--------GGUUUa----UAACGUGc -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 28332 | 0.68 | 0.840643 |
Target: 5'- -aAGUgCCGCUGCCCAAucucucgcaucUGUUGUACGg -3' miRNA: 3'- cgUCG-GGCGGCGGGUUu----------AUAACGUGC- -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 64644 | 0.68 | 0.832183 |
Target: 5'- cGCAGCgCgCGUCGCCCGAAcaa-GCAUa -3' miRNA: 3'- -CGUCG-G-GCGGCGGGUUUauaaCGUGc -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 55917 | 0.69 | 0.823531 |
Target: 5'- aGCuGCUgCGCCGCCgA---AUUGCGCGu -3' miRNA: 3'- -CGuCGG-GCGGCGGgUuuaUAACGUGC- -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 33833 | 0.69 | 0.823531 |
Target: 5'- gGCAGCCUGCgCGCUCAacgccGAUAaccGCugGu -3' miRNA: 3'- -CGUCGGGCG-GCGGGU-----UUAUaa-CGugC- -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 80283 | 0.69 | 0.823531 |
Target: 5'- gGCAGCUCaUCGCCCGAcUGggcgUGCAUa -3' miRNA: 3'- -CGUCGGGcGGCGGGUUuAUa---ACGUGc -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 21667 | 0.69 | 0.805685 |
Target: 5'- cGCAacGCgaCGCCGCCCGAcgA--GCGCGa -3' miRNA: 3'- -CGU--CGg-GCGGCGGGUUuaUaaCGUGC- -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 18692 | 0.69 | 0.805685 |
Target: 5'- aGCAGUCgcucuUGCgGCCUucAUGUUGCACa -3' miRNA: 3'- -CGUCGG-----GCGgCGGGuuUAUAACGUGc -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 42632 | 0.69 | 0.805685 |
Target: 5'- uGCGuuCCCGCCGCCgAcgg--UGCACGa -3' miRNA: 3'- -CGUc-GGGCGGCGGgUuuauaACGUGC- -5' |
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21188 | 5' | -54.3 | NC_004778.3 | + | 121421 | 0.69 | 0.796508 |
Target: 5'- aGCAGCCCcuucgaaaacGCCGCgCA---GUUGUACa -3' miRNA: 3'- -CGUCGGG----------CGGCGgGUuuaUAACGUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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