miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21188 5' -54.3 NC_004778.3 + 125055 0.68 0.856956
Target:  5'- cCAGgaCCGCUGCCCGAcgAU-GCugGu -3'
miRNA:   3'- cGUCg-GGCGGCGGGUUuaUAaCGugC- -5'
21188 5' -54.3 NC_004778.3 + 121881 0.68 0.840643
Target:  5'- aCGG-CCGuuGCCCAAGUuacgcgUGCugGg -3'
miRNA:   3'- cGUCgGGCggCGGGUUUAua----ACGugC- -5'
21188 5' -54.3 NC_004778.3 + 121421 0.69 0.796508
Target:  5'- aGCAGCCCcuucgaaaacGCCGCgCA---GUUGUACa -3'
miRNA:   3'- -CGUCGGG----------CGGCGgGUuuaUAACGUGc -5'
21188 5' -54.3 NC_004778.3 + 121395 0.67 0.900562
Target:  5'- uCAGCCCGCgGC---GAUGggUGCACGc -3'
miRNA:   3'- cGUCGGGCGgCGgguUUAUa-ACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 121151 0.69 0.784347
Target:  5'- -aAGCCCaagucgccaauuagGUCGCCCAG--GUUGUACGg -3'
miRNA:   3'- cgUCGGG--------------CGGCGGGUUuaUAACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 120976 0.68 0.848903
Target:  5'- cGC-GCCCGCUGCCCcg-----GCGCc -3'
miRNA:   3'- -CGuCGGGCGGCGGGuuuauaaCGUGc -5'
21188 5' -54.3 NC_004778.3 + 120644 0.7 0.727421
Target:  5'- aGCGcGCCCGCCGCCUcgccgcuGAAgcugcUGCGCc -3'
miRNA:   3'- -CGU-CGGGCGGCGGG-------UUUaua--ACGUGc -5'
21188 5' -54.3 NC_004778.3 + 120440 1.1 0.002798
Target:  5'- uGCAGCCCGCCGCCCAAAUAUUGCACGc -3'
miRNA:   3'- -CGUCGGGCGGCGGGUUUAUAACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 112355 0.67 0.882695
Target:  5'- cGCAGCCuCGCCGaCUAAAUgccagcuugaccgcaAgcGCGCGg -3'
miRNA:   3'- -CGUCGG-GCGGCgGGUUUA---------------UaaCGUGC- -5'
21188 5' -54.3 NC_004778.3 + 112221 0.76 0.434053
Target:  5'- aGCGGCCgCGCgGUCCAGGUGauaGCACGc -3'
miRNA:   3'- -CGUCGG-GCGgCGGGUUUAUaa-CGUGC- -5'
21188 5' -54.3 NC_004778.3 + 111675 0.73 0.57952
Target:  5'- uCAGCCCGCCGUugucggcuagcaggCCGAGcUGUUGCAgCGu -3'
miRNA:   3'- cGUCGGGCGGCG--------------GGUUU-AUAACGU-GC- -5'
21188 5' -54.3 NC_004778.3 + 107952 0.67 0.879803
Target:  5'- gGCGGCgCCaucCgGCCCGAuuuUGUUGUACGc -3'
miRNA:   3'- -CGUCG-GGc--GgCGGGUUu--AUAACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 106299 0.71 0.687382
Target:  5'- cGCccguGCCCGCCGCagccccagccCCGGuuugAUUGCGCGc -3'
miRNA:   3'- -CGu---CGGGCGGCG----------GGUUua--UAACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 103796 0.67 0.879803
Target:  5'- cCGGCCC-CCGCgCAAGc-UUGCACa -3'
miRNA:   3'- cGUCGGGcGGCGgGUUUauAACGUGc -5'
21188 5' -54.3 NC_004778.3 + 100325 0.66 0.924804
Target:  5'- cGCGGCCguacaugGCaaCGCCCAcAAUAauuUUGCGCGg -3'
miRNA:   3'- -CGUCGGg------CG--GCGGGU-UUAU---AACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 97170 0.73 0.572245
Target:  5'- aCGGCgCCGCCGgCCAGcg--UGCGCGg -3'
miRNA:   3'- cGUCG-GGCGGCgGGUUuauaACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 96501 0.66 0.93742
Target:  5'- cGCGGCggugUCGuCCGCCCAAcacaguGUGUucgcgucugcgggcgUGCACGc -3'
miRNA:   3'- -CGUCG----GGC-GGCGGGUU------UAUA---------------ACGUGC- -5'
21188 5' -54.3 NC_004778.3 + 96367 0.67 0.879803
Target:  5'- aGCGGgCCGCUGCaCC----GUUGCGCc -3'
miRNA:   3'- -CGUCgGGCGGCG-GGuuuaUAACGUGc -5'
21188 5' -54.3 NC_004778.3 + 95784 0.67 0.900562
Target:  5'- gGCAGCgCGCCGgCCGcgc--UGCGCc -3'
miRNA:   3'- -CGUCGgGCGGCgGGUuuauaACGUGc -5'
21188 5' -54.3 NC_004778.3 + 93377 0.67 0.886961
Target:  5'- aGCAGCgaaaCUGCCCGAggauGUcgUGCACGg -3'
miRNA:   3'- -CGUCGggc-GGCGGGUU----UAuaACGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.