miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21189 5' -61.9 NC_004778.3 + 1261 0.77 0.15014
Target:  5'- uCUGCGCuUGUgGGGACGACGGCggCGUGUa -3'
miRNA:   3'- -GACGCG-GCGgCUCUGCUGCCG--GCACA- -5'
21189 5' -61.9 NC_004778.3 + 1520 0.67 0.577455
Target:  5'- -gGCGCUGCCGAGGu--CGGCCa--- -3'
miRNA:   3'- gaCGCGGCGGCUCUgcuGCCGGcaca -5'
21189 5' -61.9 NC_004778.3 + 1640 0.66 0.616825
Target:  5'- gCUGCGCUGCgGAaaGCGACGcGUCGUu- -3'
miRNA:   3'- -GACGCGGCGgCUc-UGCUGC-CGGCAca -5'
21189 5' -61.9 NC_004778.3 + 5547 0.68 0.519597
Target:  5'- gCUGUGCCucuuCCGcaAGugGAuaUGGCCGUGUu -3'
miRNA:   3'- -GACGCGGc---GGC--UCugCU--GCCGGCACA- -5'
21189 5' -61.9 NC_004778.3 + 8001 0.68 0.473192
Target:  5'- gUGCGCggCGCCGAcGGCGgcgacACGGCCGa-- -3'
miRNA:   3'- gACGCG--GCGGCU-CUGC-----UGCCGGCaca -5'
21189 5' -61.9 NC_004778.3 + 8466 0.66 0.646487
Target:  5'- -gGCGgCGCCGGGGCaGCGGgCGcGg -3'
miRNA:   3'- gaCGCgGCGGCUCUGcUGCCgGCaCa -5'
21189 5' -61.9 NC_004778.3 + 10639 0.68 0.498008
Target:  5'- -gGCGCCGCUGGGccucguaauugugcGCGcCGGCCGc-- -3'
miRNA:   3'- gaCGCGGCGGCUC--------------UGCuGCCGGCaca -5'
21189 5' -61.9 NC_004778.3 + 10706 0.67 0.557964
Target:  5'- gUGCGCCGCCGcGcCGA-GGCCa--- -3'
miRNA:   3'- gACGCGGCGGCuCuGCUgCCGGcaca -5'
21189 5' -61.9 NC_004778.3 + 14566 0.67 0.587259
Target:  5'- gUGCGCCaGCauuGugGACGGCC-UGg -3'
miRNA:   3'- gACGCGG-CGgcuCugCUGCCGGcACa -5'
21189 5' -61.9 NC_004778.3 + 17245 0.67 0.567689
Target:  5'- aUGCGCgagggCGCCGAGaACGAagugcaguCGGCCGa-- -3'
miRNA:   3'- gACGCG-----GCGGCUC-UGCU--------GCCGGCaca -5'
21189 5' -61.9 NC_004778.3 + 25084 0.68 0.473192
Target:  5'- -cGCGCCGaCCGAGucacguACGcCGGCCaacGUGUu -3'
miRNA:   3'- gaCGCGGC-GGCUC------UGCuGCCGG---CACA- -5'
21189 5' -61.9 NC_004778.3 + 32055 0.67 0.548287
Target:  5'- -cGCGCCGCCacacGAUGGCGGUCa--- -3'
miRNA:   3'- gaCGCGGCGGcu--CUGCUGCCGGcaca -5'
21189 5' -61.9 NC_004778.3 + 32271 0.7 0.411968
Target:  5'- -cGCGCaCGCUGGccGGCGGCG-CCGUGUc -3'
miRNA:   3'- gaCGCG-GCGGCU--CUGCUGCcGGCACA- -5'
21189 5' -61.9 NC_004778.3 + 33366 0.66 0.597092
Target:  5'- -gGCGaCGUCGcGGACGACGcGCCGUc- -3'
miRNA:   3'- gaCGCgGCGGC-UCUGCUGC-CGGCAca -5'
21189 5' -61.9 NC_004778.3 + 43988 0.69 0.464159
Target:  5'- -cGCGCCGCCca-ACGcGCGGCCGgcggGUa -3'
miRNA:   3'- gaCGCGGCGGcucUGC-UGCCGGCa---CA- -5'
21189 5' -61.9 NC_004778.3 + 49434 0.68 0.491517
Target:  5'- uUGCGCCGCCGAcGcagccucuuGCGAgGGCaCGUu- -3'
miRNA:   3'- gACGCGGCGGCU-C---------UGCUgCCG-GCAca -5'
21189 5' -61.9 NC_004778.3 + 61000 0.69 0.464159
Target:  5'- -gGCGgCGgCGGcGGCGGCGGCgGUGg -3'
miRNA:   3'- gaCGCgGCgGCU-CUGCUGCCGgCACa -5'
21189 5' -61.9 NC_004778.3 + 61295 0.68 0.500802
Target:  5'- aUGCGCCGUCGccGACGugcgagaguACGGCCGc-- -3'
miRNA:   3'- gACGCGGCGGCu-CUGC---------UGCCGGCaca -5'
21189 5' -61.9 NC_004778.3 + 65156 0.72 0.29866
Target:  5'- ---aGCgGCCGGGugGACGGCCGc-- -3'
miRNA:   3'- gacgCGgCGGCUCugCUGCCGGCaca -5'
21189 5' -61.9 NC_004778.3 + 69773 0.68 0.473192
Target:  5'- -gGUGUgGCgCGAGAaccgagaGGCGGCCGUGc -3'
miRNA:   3'- gaCGCGgCG-GCUCUg------CUGCCGGCACa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.